RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ARFGEF1Q9Y6D6 1849 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 SHTN1A0MZ66 631 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 GOLGA6L3A6NEY3 463 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 ALG1L2C9J202 215 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 NFKBIEO00221 500 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 ZBTB39O15060 712 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 GRIN3BO60391 1043 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 CT47B1P0C2W7 299 aaPredicted RBP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 POU3F3P20264 500 aaPredicted RBP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 YY1P25490 414 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 MAN1A1P33908 653 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 PRELPP51888 382 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 DNM1Q05193 864 aaKnown RBP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 RAPGEF1Q13905 1077 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 SLC10A5Q5PT55 438 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 AXDND1Q5T1B0 1012 aaPredicted RBP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 DDX42Q86XP3 938 aaKnown RBP eCLIP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 CACTIN-AS1Q8N1I8 211 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 LINS1Q8NG48 757 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 CPLX3Q8WVH0 158 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 CELF1Q92879 486 aaKnown RBP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 CNKSR1Q969H4 720 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 GTPBP4Q9BZE4 634 aaKnown RBP5.43□□□□□ -1.54
SF3B1-202ENST00000409915 ZNF700Q9H0M5 742 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 ZHX3Q9H4I2 956 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 SEC31BQ9NQW1 1179 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 ANAPC4Q9UJX5 808 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 INTUQ9ULD6 942 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 PTPRCP08575 1304 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 KIF16BQ96L93 1317 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 CDHR2Q9BYE9 1310 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 TAF1P21675 1872 aa5.43□□□□□ -1.54
SF3B1-202ENST00000409915 SIAH2O43255 324 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 PDE8AO60658 829 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 AVPP01185 164 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 TRIM27P14373 513 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 HOXA10P31260 410 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-202ENST00000409915 CASP7P55210 303 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 CTSWP56202 376 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 HLTFQ14527 1009 aaKnown RBP eCLIP5.42□□□□□ -1.54
SF3B1-202ENST00000409915 TCEA2Q15560 299 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 NBPF20Q3BBV1 942 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 C4orf48Q5BLP8 95 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 EPHA10Q5JZY3 1008 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 DDX46Q7L014 1031 aaKnown RBP5.42□□□□□ -1.54
SF3B1-202ENST00000409915 MYO1HQ8N1T3 1032 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 CELF2-AS1Q8N7Q2 184 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 PDILTQ8N807 584 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 SNIP1Q8TAD8 396 aaKnown RBP5.42□□□□□ -1.54
SF3B1-202ENST00000409915 C7orf43Q8WVR3 580 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 EDEM1Q92611 657 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 RBM17Q96I25 401 aaKnown RBP5.42□□□□□ -1.54
SF3B1-202ENST00000409915 SUCLG2Q96I99 432 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-202ENST00000409915 OSBPL7Q9BZF2 842 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 SRCIN1Q9C0H9 1055 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 GREM2Q9H772 168 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 YY1AP1Q9H869 796 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 RNF181Q9P0P0 153 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 ADAMTS1Q9UHI8 967 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 PCDHB11Q9Y5F2 797 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 CACNA1FO60840 1977 aa5.42□□□□□ -1.54
SF3B1-202ENST00000409915 SNED1Q8TER0 1413 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 H7C1W4 665 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 GRM8O00222 908 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 SMAD7O15105 426 aaKnown RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 TBX3O15119 743 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 PDPK1O15530 556 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 EPB41L2O43491 1005 aaKnown RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 LETM1O95202 739 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 ASMTLO95671 621 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 PDGFAP04085 211 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 NBPF7P0C2Y1 421 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 USP17L7P0C7H9 530 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 PMLP29590 882 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 ALDH1B1P30837 517 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 SOX9P48436 509 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 WNT7BP56706 349 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 MCL1Q07820 350 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 GRAPQ13588 217 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 SF3B3Q15393 1217 aaKnown RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 MAPRE1Q15691 268 aaKnown RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 CCDC93Q567U6 631 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 C2orf27AQ580R0 203 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 FAM26DQ5JW98 314 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 PI16Q6UXB8 463 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 TNS4Q8IZW8 715 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 TTLL11Q8NHH1 800 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 GRAPLQ8TC17 118 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 CHAC2Q8WUX2 184 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 FOXJ1Q92949 421 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 GPR101Q96P66 508 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 CRAMP1Q96RY5 1269 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 RBSNQ9H1K0 784 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 DNAJC25Q9H1X3 360 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 TSPAN10Q9H1Z9 355 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 TAOK3Q9H2K8 898 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 PPCSQ9HAB8 311 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 ENAMQ9NRM1 1142 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms