RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 KCTD19Q17RG1 926 aaPredicted RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 WHAMMP3Q1A5X7 153 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 KCTD16Q68DU8 428 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 TADA2BQ86TJ2 420 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 CNNM1Q9NRU3 951 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 GOLGA6AQ9NYA3 693 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 EPN1Q9Y6I3 576 aaPredicted RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 LRRC37A3O60309 1634 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 CFAP99D6REC4 459 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 H7C1W4 665 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 PRKAB2O43741 272 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 MMP1P03956 469 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 ZFYP08048 801 aaPredicted RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 GUCY2CP25092 1073 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 ARHGAP25P42331 645 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 ATP1A2P50993 1020 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 LDHAL6AQ6ZMR3 332 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 SND1Q7KZF4 910 aaKnown RBP eCLIP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 TMTC1Q8IUR5 882 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 FAM76AQ8TAV0 307 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 PAGE5Q96GU1 130 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 LY9Q9HBG7 655 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 SMARCAL1Q9NZC9 954 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 HEG1Q9ULI3 1381 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 MINDY4BA8MYZ0 360 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 EXOC5O00471 708 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 EBAG9O00559 213 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 PHKG2P15735 406 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 SARSP49591 514 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 EZH2Q15910 746 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 EARS2Q5JPH6 523 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 CYP26C1Q6V0L0 522 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 APTXQ7Z2E3 356 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 IGDCC4Q8TDY8 1250 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 DDX17Q92841 729 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 ARMT1Q9H993 441 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 MED4Q9NPJ6 270 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 PIH1D3Q9NQM4 214 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 HPCAL4Q9UM19 191 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 SAR1BQ9Y6B6 198 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 PIK3C2AO00443 1686 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 RFX7Q2KHR2 1363 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 TRIM49BA6NDI0 452 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 WNT7AO00755 349 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 ZPR1O75312 459 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 CXCR5P32302 372 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 RILPL1Q5EBL4 403 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 MIGA1Q8NAN2 632 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 FMN2Q9NZ56 1722 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 GOLGA6BA6NDN3 693 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 SMIM22K7EJ46 135 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 MYO1BO43795 1136 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 ERCC5P28715 1186 aaPredicted RBP11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 TDO2P48775 406 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 GNGT1P63211 74 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 LRP10Q7Z4F1 713 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 SMCR8Q8TEV9 937 aaPredicted RBP11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 NAA15Q9BXJ9 866 aaKnown RBP11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 CENPHQ9H3R5 247 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 IQSEC3Q9UPP2 1182 aaPredicted RBP11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 GDAQ9Y2T3 454 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 FAM169AQ9Y6X4 670 aa11.1□□□□□ -0.63
PTCHD4-202ENST00000398738 TRIM75PA6NK02 468 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 PPP1R3GB7ZBB8 358 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 NDUFA10O95299 355 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 USP14P54578 494 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 IFIT5Q13325 482 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 HDAC7Q8WUI4 952 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 KAT2BQ92831 832 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 JAKMIP2Q96AA8 810 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 RRP36Q96EU6 259 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 SELENOOQ9BVL4 669 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 TTC26A0AVF1 554 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 RGPD8O14715 1765 aaPredicted RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 HOXA2O43364 376 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 LILRB3O75022 631 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 MBD4O95243 580 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 COPB1P53618 953 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 DOK7Q18PE1 504 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 IFNL2Q8IZJ0 200 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 ANKRD20A12PQ8NF67 263 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 CTAGE1Q96RT6 745 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 SRPRBQ9Y5M8 271 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 CPDO75976 1380 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 ERICH2A1L162 156 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 IDEP14735 1019 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 EIF5P55010 431 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 WTAPQ15007 396 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 MAP9Q49MG5 647 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 KANK3Q6NY19 840 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 EFCAB13Q8IY85 973 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 COG1Q8WTW3 980 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 CALR3Q96L12 384 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 EHD2Q9NZN4 543 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 MTMR7Q9Y216 660 aa11.09□□□□□ -0.63
PTCHD4-202ENST00000398738 KCNJ18B7U540 433 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 PDE2AO00408 941 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 DNAJB2P25686 324 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 PHKA1P46020 1223 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms