RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CFAP45Q9UL16 551 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 SCN4AP35499 1836 aa30.87■■■□□ 2.53
MSX1-201ENST00000382723 FAM83BQ5T0W9 1011 aa30.87■■■□□ 2.53
MSX1-201ENST00000382723 SPATA32Q96LK8 384 aa30.87■■■□□ 2.53
MSX1-201ENST00000382723 USP28Q96RU2 1077 aa30.87■■■□□ 2.53
MSX1-201ENST00000382723 WDR90Q96KV7 1748 aa30.87■■■□□ 2.53
MSX1-201ENST00000382723 CSPP1Q1MSJ5 1256 aa30.86■■■□□ 2.53
MSX1-201ENST00000382723 TMEM87AQ8NBN3 555 aa30.86■■■□□ 2.53
MSX1-201ENST00000382723 CDCA5Q96FF9 252 aa30.86■■■□□ 2.53
MSX1-201ENST00000382723 SCAND2PQ9GZW5 306 aaPredicted RBP30.86■■■□□ 2.53
MSX1-201ENST00000382723 ZBTB4Q9P1Z0 1013 aaPredicted RBP30.86■■■□□ 2.53
MSX1-201ENST00000382723 NAPAP54920 295 aa30.86■■■□□ 2.53
MSX1-201ENST00000382723 NPY5RQ15761 445 aa30.86■■■□□ 2.53
MSX1-201ENST00000382723 PNMA6FA0A0J9YX94 578 aa30.85■■■□□ 2.53
MSX1-201ENST00000382723 GADD45BO75293 160 aaPredicted RBP30.85■■■□□ 2.53
MSX1-201ENST00000382723 POTEIP0CG38 1075 aa30.85■■■□□ 2.53
MSX1-201ENST00000382723 POTEJP0CG39 1038 aa30.85■■■□□ 2.53
MSX1-201ENST00000382723 PTPRAP18433 802 aa30.85■■■□□ 2.53
MSX1-201ENST00000382723 CCDC148Q8NFR7 591 aa30.85■■■□□ 2.53
MSX1-201ENST00000382723 DCAF8L1A6NGE4 600 aa30.85■■■□□ 2.53
MSX1-201ENST00000382723 DDX55Q8NHQ9 600 aaKnown RBP eCLIP30.85■■■□□ 2.53
MSX1-201ENST00000382723 LEO1Q8WVC0 666 aaPredicted RBP30.85■■■□□ 2.53
MSX1-201ENST00000382723 PPP1R12BO60237 982 aaPredicted RBP30.84■■■□□ 2.53
MSX1-201ENST00000382723 SYDE2Q5VT97 1194 aa30.84■■■□□ 2.53
MSX1-201ENST00000382723 ATL3Q6DD88 541 aa30.84■■■□□ 2.53
MSX1-201ENST00000382723 RRAGCQ9HB90 399 aa30.84■■■□□ 2.53
MSX1-201ENST00000382723 DDX49Q9Y6V7 483 aaKnown RBP30.84■■■□□ 2.53
MSX1-201ENST00000382723 TCHHQ07283 1943 aa30.84■■■□□ 2.53
MSX1-201ENST00000382723 ZBTB5O15062 677 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 CALML3P27482 149 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 COA7Q96BR5 231 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 KIAA1683Q9H0B3 1180 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 ZHX2Q9Y6X8 837 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 ADAMTS3O15072 1205 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 NF2P35240 595 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 STAT2P52630 851 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 SNAP25P60880 206 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 SPP2Q13103 211 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 DGKZQ13574 1117 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 MTMR2Q13614 643 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 MTMR8Q96EF0 704 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 AS3MTQ9HBK9 375 aa30.83■■■□□ 2.53
MSX1-201ENST00000382723 DOCK1Q14185 1865 aa30.82■■■□□ 2.53
MSX1-201ENST00000382723 PPP1R11O60927 126 aaPredicted RBP30.82■■■□□ 2.52
MSX1-201ENST00000382723 CCDC12Q8WUD4 166 aaPredicted RBP30.82■■■□□ 2.52
MSX1-201ENST00000382723 PCDHA4Q9UN74 947 aa30.82■■■□□ 2.52
MSX1-201ENST00000382723 CLIC4Q9Y696 253 aa30.82■■■□□ 2.52
MSX1-201ENST00000382723 MAP3K9P80192 1104 aa30.81■■■□□ 2.52
MSX1-201ENST00000382723 CDC37Q16543 378 aaPredicted RBP30.81■■■□□ 2.52
MSX1-201ENST00000382723 SKOR2Q2VWA4 1001 aaPredicted RBP30.81■■■□□ 2.52
MSX1-201ENST00000382723 NOL9Q5SY16 702 aaKnown RBP30.81■■■□□ 2.52
MSX1-201ENST00000382723 BTNL9Q6UXG8 535 aa30.81■■■□□ 2.52
MSX1-201ENST00000382723 BLIDQ8IZY5 108 aa30.81■■■□□ 2.52
MSX1-201ENST00000382723 QRICH1Q2TAL8 776 aa30.81■■■□□ 2.52
MSX1-201ENST00000382723 ZNF280CQ8ND82 737 aa30.81■■■□□ 2.52
MSX1-201ENST00000382723 WDR18Q9BV38 432 aa30.81■■■□□ 2.52
MSX1-201ENST00000382723 FAM205CA6NFA0 338 aa30.8■■■□□ 2.52
MSX1-201ENST00000382723 TRIM75PA6NK02 468 aa30.8■■■□□ 2.52
MSX1-201ENST00000382723 hCG_1984214I3L0E3 225 aa30.8■■■□□ 2.52
MSX1-201ENST00000382723 VGLL4Q14135 290 aa30.8■■■□□ 2.52
MSX1-201ENST00000382723 TTLL12Q14166 644 aaPredicted RBP30.8■■■□□ 2.52
MSX1-201ENST00000382723 EARS2Q5JPH6 523 aaKnown RBP30.8■■■□□ 2.52
MSX1-201ENST00000382723 SAMD1Q6SPF0 538 aaPredicted RBP30.8■■■□□ 2.52
MSX1-201ENST00000382723 PPP1R3FQ6ZSY5 799 aaPredicted RBP30.8■■■□□ 2.52
MSX1-201ENST00000382723 ZNF713Q8N859 430 aaPredicted RBP30.8■■■□□ 2.52
MSX1-201ENST00000382723 RTEL1Q9NZ71 1219 aa30.8■■■□□ 2.52
MSX1-201ENST00000382723 SMCO2A6NFE2 343 aa30.79■■■□□ 2.52
MSX1-201ENST00000382723 NOM1Q5C9Z4 860 aaKnown RBP30.79■■■□□ 2.52
MSX1-201ENST00000382723 MAP1SQ66K74 1059 aaPredicted RBP30.79■■■□□ 2.52
MSX1-201ENST00000382723 GPT2Q8TD30 523 aa30.79■■■□□ 2.52
MSX1-201ENST00000382723 TNFRSF25Q93038 417 aa30.79■■■□□ 2.52
MSX1-201ENST00000382723 PRR12Q9ULL5 1215 aa30.79■■■□□ 2.52
MSX1-201ENST00000382723 IREB2P48200 963 aaKnown RBP30.79■■■□□ 2.52
MSX1-201ENST00000382723 ZMYND12Q9H0C1 365 aa30.79■■■□□ 2.52
MSX1-201ENST00000382723 ELP1O95163 1332 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 MYH15Q9Y2K3 1946 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 ANO1Q5XXA6 986 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 MOB2Q70IA6 237 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 RASGRP4Q8TDF6 673 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 LPAR1Q92633 364 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 KIFC2Q96AC6 838 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 C6orf50Q9HD87 102 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 RCOR1Q9UKL0 485 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 SNCAIPQ9Y6H5 919 aa30.78■■■□□ 2.52
MSX1-201ENST00000382723 BACE1P56817 501 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 GALNT17Q6IS24 598 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 FAM177A1Q8N128 213 aaPredicted RBP30.77■■■□□ 2.52
MSX1-201ENST00000382723 CHURC1Q8WUH1 139 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 EMILIN3Q9NT22 766 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 FBXO28Q9NVF7 368 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 POLR3EQ9NVU0 708 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 CSADQ9Y600 493 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 ATP2B1P20020 1258 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 TOB1P50616 345 aaPredicted RBP30.77■■■□□ 2.52
MSX1-201ENST00000382723 USP14P54578 494 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 UBE2HP62256 183 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 STK38Q15208 465 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 DAGLBQ8NCG7 672 aa30.77■■■□□ 2.52
MSX1-201ENST00000382723 ZNF526Q8TF50 670 aaPredicted RBP30.77■■■□□ 2.52
MSX1-201ENST00000382723 FEM1BQ9UK73 627 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 727 ms