RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 RAB20Q9NX57 234 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 PPP1R9AQ9ULJ8 1098 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 GUCY2FP51841 1108 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 SLC12A2P55011 1212 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 DEUP1Q05D60 604 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 GCKRQ14397 625 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 HADHQ16836 314 aaKnown RBP10.51□□□□□ -0.73
SNX1-202ENST00000380285 ZC3H15Q8WU90 426 aaKnown RBP10.51□□□□□ -0.73
SNX1-202ENST00000380285 NSMCE1Q8WV22 266 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 HOOK2Q96ED9 719 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 EPS15L1Q9UBC2 864 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 TTC37Q6PGP7 1564 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 GSPT1P15170 499 aaKnown RBP10.51□□□□□ -0.73
SNX1-202ENST00000380285 ARHGEF18Q6ZSZ5 1173 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 USP28Q96RU2 1077 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 HAUS7Q99871 368 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 SPTLC3Q9NUV7 552 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 PNMA6EA0A0J9YXQ4 647 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 SH3BP5O60239 455 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 INTS9Q9NV88 658 aaKnown RBP10.51□□□□□ -0.73
SNX1-202ENST00000380285 PCDHA7Q9UN72 937 aa10.51□□□□□ -0.73
SNX1-202ENST00000380285 LMNAP02545 664 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 KRT3P12035 628 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 HIBADHP31937 336 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 RASA3Q14644 834 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 FAM173BQ6P4H8 233 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 PLCD3Q8N3E9 789 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 DDX27Q96GQ7 796 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 PBRM1Q86U86 1689 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 MAP3K19Q56UN5 1328 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 RPN1P04843 607 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 H2AFZP0C0S5 128 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 COPB1P53618 953 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 AOC3Q16853 763 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 H2AFVQ71UI9 128 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 PHKBQ93100 1093 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 RBM17Q96I25 401 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 NCAPGQ9BPX3 1015 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ARMT1Q9H993 441 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 MYO5CQ9NQX4 1742 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 GLE1Q53GS7 698 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 PDZD4Q76G19 769 aaPredicted RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 ZNF654Q8IZM8 581 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 SPATA5Q8NB90 893 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 TBC1D22AQ8WUA7 517 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 PHF23Q9BUL5 403 aaPredicted RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 FANCLQ9NW38 375 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 TRPC6Q9Y210 931 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 CLTAP09496 248 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ATF2P15336 505 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 CCT5P48643 541 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 SLC39A14Q15043 492 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 EMBQ6PCB8 327 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 G2E3Q7L622 706 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 BLIDQ8IZY5 108 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 FBXO18Q8NFZ0 1043 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 USP19O94966 1318 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ADCY8P40145 1251 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 BPIFB4P59827 614 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 CUL1Q13616 776 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ANKRD20A4Q4UJ75 823 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ANKRD20A8PQ5CZ79 823 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ANKRD20A2Q5SQ80 823 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ANKRD20A1Q5TYW2 823 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 OTUD6AQ7L8S5 288 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 DPH6Q7L8W6 267 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ANKRD35Q8N283 1001 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 ERBB4Q15303 1308 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 LRMPQ12912 555 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 TRMT44Q8IYL2 757 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 CSRNP1Q96S65 589 aa10.5□□□□□ -0.73
SNX1-202ENST00000380285 GARSP41250 739 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 ZKSCAN8Q15776 578 aaPredicted RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 TRMT2AQ8IZ69 625 aaKnown RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.5□□□□□ -0.73
SNX1-202ENST00000380285 ATP7AQ04656 1500 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 HSPA8P11142 646 aaKnown RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 PDE6BP35913 854 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 TIMM10P62072 90 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 ZNF622Q969S3 477 aaKnown RBP eCLIP10.49□□□□□ -0.735e-7■■■■□ 20.8
SNX1-202ENST00000380285 SDCCAG3Q96C92 435 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 ABCC12Q96J65 1359 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SKIP12755 728 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 MAGEA9P43362 315 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 RASIP1Q5U651 963 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 U2AF1L4Q8WU68 220 aaKnown RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 NLRP7Q8WX94 980 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 RUBCNQ92622 972 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 TPCN1Q9ULQ1 816 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 RTCBQ9Y3I0 505 aaKnown RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 ARHGAP42A6NI28 874 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SEMA3EO15041 775 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SART1O43290 800 aaKnown RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 ATP1A2P50993 1020 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 NDUFA8P51970 172 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 NCAPH2Q6IBW4 605 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 PSMB7Q99436 277 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 SATB1Q01826 763 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms