RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM47E-STBD1D6RA91 191 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PRRG1O14668 218 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PDE1BQ01064 536 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 TMEM67Q5HYA8 995 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 MIS18BP1Q6P0N0 1132 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 DUS1LQ6P1R4 473 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 KIFAP3Q92845 792 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 GPR20Q99678 358 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 SLC12A5Q9H2X9 1139 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ABCC11Q96J66 1382 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 KDM5BQ9UGL1 1544 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 GOLGA6L10A0A0M3HER8 536 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 IPO5O00410 1097 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 CCP110O43303 1012 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 DYRK3O43781 588 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 HARSP12081 509 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 PPM1AP35813 382 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 IFNAR2P48551 515 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 SURF1Q15526 300 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 IFI16Q16666 785 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 CFAP100Q494V2 611 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 TIGD5Q53EQ6 642 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PPFIBP1Q86W92 1011 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 NME9Q86XW9 330 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PROCA1Q8NCQ7 364 aaPredicted RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 SSH3Q8TE77 659 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ALG1Q9BT22 464 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 MRPL9Q9BYD2 267 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 KANSL2Q9H9L4 492 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PCDHB7Q9Y5E2 793 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 CCND2P30279 289 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PTK2BQ14289 1009 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 GNASQ5JWF2 1037 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 TOGARAM2Q6ZUX3 1019 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ZNF467Q7Z7K2 595 aaPredicted RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 SCFD1Q8WVM8 642 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 DDX1Q92499 740 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.55□□□□□ -1.68
USH2A-202ENST00000366942 SNX25Q9H3E2 840 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 SCUBE2Q9NQ36 999 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 NFU1Q9UMS0 254 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ATP10BO94823 1461 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PALLDQ8WX93 1383 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 USP17L10C9JJH3 530 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ADCY3O60266 1144 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 CACNB1Q02641 598 aaPredicted RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 POSTNQ15063 836 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 CNNM4Q6P4Q7 775 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 FSIP1Q8NA03 581 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 AGBL3Q8NEM8 1001 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 LINS1Q8NG48 757 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 HVCN1Q96D96 273 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 NEK1Q96PY6 1258 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 NUCKS1Q9H1E3 243 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 RPRD1BQ9NQG5 326 aaKnown RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 SCAF11Q99590 1463 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 CARMIL3Q8ND23 1372 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 H7C4K7 107 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ZWINTO95229 277 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 CFBP00751 764 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 HSPA1AP0DMV8 641 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 HSPA1BP0DMV9 641 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 ALPPL2P10696 532 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 IKBKEQ14164 716 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 KHDRBS2Q5VWX1 349 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 PLEKHH3Q7Z736 793 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 STKLD1Q8NE28 680 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 PLBD2Q8NHP8 589 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 SNX19Q92543 992 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 FOPNLQ96NB1 174 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 IQCGQ9H095 443 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 TRIM45Q9H8W5 580 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 PI4KBQ9UBF8 816 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 NARFQ9UHQ1 456 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GGT7Q9UJ14 662 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 DBR1Q9UK59 544 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 AFG3L2Q9Y4W6 797 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 FPGT-TNNI3KV9GXZ4 949 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ADGRF5Q8IZF2 1346 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 BIN1O00499 593 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ITGAXP20702 1163 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 TWF2Q6IBS0 349 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 RABEPKQ7Z6M1 372 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 AFAP1L2Q8N4X5 818 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 CNNM3Q8NE01 707 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 CCDC127Q96BQ5 260 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 EDC3Q96F86 508 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 RAB3IPQ96QF0 476 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 MAK16Q9BXY0 300 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 ELP3Q9H9T3 547 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 SUGCTQ9HAC7 445 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 BCL2L12Q9HB09 334 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 RCAN3Q9UKA8 241 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 URB2Q14146 1524 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 RSPH10B2B2RC85 870 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 APAF1O14727 1248 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ATP1A1P05023 1023 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 RSPH10BP0C881 870 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GRAPQ13588 217 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 DNAJC21Q5F1R6 531 aaKnown RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms