RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 CHMP2AO43633 222 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 CMA1P23946 247 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 NLGN2Q8NFZ4 835 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 CCDC17Q96LX7 622 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 KIAA1468Q9P260 1216 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 ZNF70Q9UC06 446 aaPredicted RBP12.6□□□□□ -0.39
SVIP-201ENST00000354193 CCDC39Q9UFE4 941 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 SWAP70Q9UH65 585 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 CNOT7Q9UIV1 285 aaKnown RBP12.6□□□□□ -0.39
SVIP-201ENST00000354193 PDHBP11177 359 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 PKN1Q16512 942 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 SHC4Q6S5L8 630 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 CUL5Q93034 780 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 NRDCO43847 1150 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 GMPSP49915 693 aaPredicted RBP12.6□□□□□ -0.39
SVIP-201ENST00000354193 MRPL12P52815 198 aaKnown RBP12.6□□□□□ -0.39
SVIP-201ENST00000354193 GRM4Q14833 912 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 TNIP1Q15025 636 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 RRAGBQ5VZM2 374 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 ACER1Q8TDN7 264 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 ZDHHC15Q96MV8 337 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 CYTH3O43739 400 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 CCDC186Q7Z3E2 898 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 MAD2L2Q9UI95 211 aa12.6□□□□□ -0.39
SVIP-201ENST00000354193 MYH2Q9UKX2 1941 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 TYW1BQ6NUM6 668 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 FOXP4Q8IVH2 680 aaPredicted RBP12.59□□□□□ -0.39
SVIP-201ENST00000354193 ADGRF4Q8IZF3 695 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 FAM43AQ8N2R8 423 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 CCDC43Q96MW1 224 aaKnown RBP12.59□□□□□ -0.39
SVIP-201ENST00000354193 FAM198AQ9UFP1 575 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 PCDHA4Q9UN74 947 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 SHMT1P34896 483 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 FAM83BQ5T0W9 1011 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 ZNF341Q9BYN7 854 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 ZBTB21Q9ULJ3 1066 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 DDX39AO00148 427 aaKnown RBP12.59□□□□□ -0.39
SVIP-201ENST00000354193 TOB1P50616 345 aaPredicted RBP12.59□□□□□ -0.39
SVIP-201ENST00000354193 NSMFQ6X4W1 530 aa12.59□□□□□ -0.39
SVIP-201ENST00000354193 CCDC47Q96A33 483 aaKnown RBP12.59□□□□□ -0.39
SVIP-201ENST00000354193 SORBS3O60504 671 aa12.58□□□□□ -0.39
SVIP-201ENST00000354193 TMEM266Q2M3C6 531 aa12.58□□□□□ -0.39
SVIP-201ENST00000354193 DYMQ7RTS9 669 aa12.58□□□□□ -0.39
SVIP-201ENST00000354193 POLD4Q9HCU8 107 aa12.58□□□□□ -0.39
SVIP-201ENST00000354193 SUGT1Q9Y2Z0 365 aa12.58□□□□□ -0.39
SVIP-201ENST00000354193 MYH13Q9UKX3 1938 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 KLRG2A4D1S0 409 aaPredicted RBP12.58□□□□□ -0.4
SVIP-201ENST00000354193 C15orf52Q6ZUT6 534 aaKnown RBP12.58□□□□□ -0.4
SVIP-201ENST00000354193 ZNF526Q8TF50 670 aaPredicted RBP12.58□□□□□ -0.4
SVIP-201ENST00000354193 FBXO28Q9NVF7 368 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 SAMM50Q9Y512 469 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 NEMFO60524 1076 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 BMP3P12645 472 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 GRM1Q13255 1194 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 FAM177A1Q8N128 213 aaPredicted RBP12.58□□□□□ -0.4
SVIP-201ENST00000354193 RNF181Q9P0P0 153 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 SERPINA10Q9UK55 444 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 PDS5AQ29RF7 1337 aaKnown RBP12.58□□□□□ -0.4
SVIP-201ENST00000354193 WNT7AO00755 349 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 U2AF2P26368 475 aaKnown RBP eCLIP12.58□□□□□ -0.41e-7■■■■■ 29.1
SVIP-201ENST00000354193 ASIC1P78348 528 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 POSTNQ15063 836 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 CDC37Q16543 378 aaPredicted RBP12.58□□□□□ -0.4
SVIP-201ENST00000354193 TMC6Q7Z403 805 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 IQUBQ8NA54 791 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 IFNKQ9P0W0 207 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 GAKO14976 1311 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 STK36Q9NRP7 1315 aa12.58□□□□□ -0.4
SVIP-201ENST00000354193 SPDYE2BA6NHP3 402 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 ADAMTS3O15072 1205 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 SPDYE6P0CI01 402 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 ALAS1P13196 640 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 PTGS1P23219 599 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 ASPRV1Q53RT3 343 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 TMEM179Q6ZVK1 233 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 GPIHBP1Q8IV16 184 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 FAM163AQ96GL9 167 aaPredicted RBP12.57□□□□□ -0.4
SVIP-201ENST00000354193 LZTS2Q9BRK4 669 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 SPON1Q9HCB6 807 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 AKAP11Q9UKA4 1901 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 NDUFB10O96000 172 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 EGFRP00533 1210 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 QRICH1Q2TAL8 776 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 PRR16Q569H4 304 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 KRBA2Q6ZNG9 492 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 FMR1NBQ8N0W7 255 aaPredicted RBP12.57□□□□□ -0.4
SVIP-201ENST00000354193 CALML4Q96GE6 196 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 PHF20Q9BVI0 1012 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 MYOZ2Q9NPC6 264 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 ASTN2O75129 1339 aaPredicted RBP12.57□□□□□ -0.4
SVIP-201ENST00000354193 FLOT1O75955 427 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 NEK8Q86SG6 692 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 FBXO11Q86XK2 927 aa12.57□□□□□ -0.4
SVIP-201ENST00000354193 RRAGDQ9NQL2 400 aaPredicted RBP12.57□□□□□ -0.4
SVIP-201ENST00000354193 TRMT1Q9NXH9 659 aaKnown RBP12.57□□□□□ -0.4
SVIP-201ENST00000354193 CALCRLQ16602 461 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 GPATCH4Q5T3I0 446 aaKnown RBP12.56□□□□□ -0.4
SVIP-201ENST00000354193 DLK2Q6UY11 383 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 KRT25Q7Z3Z0 450 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 ZSCAN30Q86W11 494 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms