RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 FMR1Q06787 632 aaKnown RBP eCLIP16.95■□□□□ 0.3
CXCL12-201ENST00000343575 CCDC96Q2M329 555 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 NOL9Q5SY16 702 aaKnown RBP16.95■□□□□ 0.3
CXCL12-201ENST00000343575 ADGRF4Q8IZF3 695 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 PIGSQ96S52 555 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 VAT1LQ9HCJ6 419 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 DDX49Q9Y6V7 483 aaKnown RBP16.95■□□□□ 0.3
CXCL12-201ENST00000343575 DGKZQ13574 1117 aa16.94■□□□□ 0.3
CXCL12-201ENST00000343575 ZYXQ15942 572 aaKnown RBP16.94■□□□□ 0.3
CXCL12-201ENST00000343575 MAP1SQ66K74 1059 aaPredicted RBP16.94■□□□□ 0.3
CXCL12-201ENST00000343575 GPKOWQ92917 476 aaPredicted RBP eCLIP16.94■□□□□ 0.3
CXCL12-201ENST00000343575 MTMR8Q96EF0 704 aa16.94■□□□□ 0.3
CXCL12-201ENST00000343575 PHF20Q9BVI0 1012 aa16.94■□□□□ 0.3
CXCL12-201ENST00000343575 ZMYND15Q9H091 742 aa16.94■□□□□ 0.3
CXCL12-201ENST00000343575 NMRK2Q9NPI5 230 aa16.94■□□□□ 0.3
CXCL12-201ENST00000343575 OTOFQ9HC10 1997 aa16.94■□□□□ 0.3
CXCL12-201ENST00000343575 WWC2Q6AWC2 1192 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 MCTP1Q6DN14 999 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 MOB2Q70IA6 237 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 OXER1Q8TDS5 423 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 ZSCAN16Q9H4T2 348 aaPredicted RBP16.93■□□□□ 0.3
CXCL12-201ENST00000343575 SNCAIPQ9Y6H5 919 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 BTBD18B2RXH4 712 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 USP17L10C9JJH3 530 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 PPP1R11O60927 126 aaPredicted RBP16.93■□□□□ 0.3
CXCL12-201ENST00000343575 BMP3P12645 472 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 U2AF2P26368 475 aaKnown RBP eCLIP16.93■□□□□ 0.3
CXCL12-201ENST00000343575 VGLL4Q14135 290 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 BTNL9Q6UXG8 535 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 WDR18Q9BV38 432 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 KIAA1683Q9H0B3 1180 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 GOPCQ9HD26 462 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 RBM27Q9P2N5 1060 aaKnown RBP16.93■□□□□ 0.3
CXCL12-201ENST00000343575 CNPY2Q9Y2B0 182 aa16.93■□□□□ 0.3
CXCL12-201ENST00000343575 TRAF5O00463 557 aa16.92■□□□□ 0.3
CXCL12-201ENST00000343575 MTERF4Q7Z6M4 381 aaKnown RBP16.92■□□□□ 0.3
CXCL12-201ENST00000343575 HOMER1Q86YM7 354 aa16.92■□□□□ 0.3
CXCL12-201ENST00000343575 RRP36Q96EU6 259 aaKnown RBP16.92■□□□□ 0.3
CXCL12-201ENST00000343575 GDPD2Q9HCC8 539 aa16.92■□□□□ 0.3
CXCL12-201ENST00000343575 TMEM232C9JQI7 657 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 STXBP3O00186 592 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 MAP3K9P80192 1104 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 SPP2Q13103 211 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 CSPP1Q1MSJ5 1256 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 FAM83BQ5T0W9 1011 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 EMILIN3Q9NT22 766 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 BARHL2Q9NY43 387 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 CLEC11AQ9Y240 323 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 ATP6V1DQ9Y5K8 247 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 ZHX2Q9Y6X8 837 aa16.91■□□□□ 0.3
CXCL12-201ENST00000343575 PPP1R12BO60237 982 aaPredicted RBP16.9■□□□□ 0.3
CXCL12-201ENST00000343575 ZNF500O60304 480 aaPredicted RBP16.9■□□□□ 0.3
CXCL12-201ENST00000343575 NR5A1Q13285 461 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 MTMR2Q13614 643 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 TRIM29Q14134 588 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 MAP3K11Q16584 847 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 DIS3L2Q8IYB7 885 aaKnown RBP16.9■□□□□ 0.3
CXCL12-201ENST00000343575 SH2D4AQ9H788 454 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 SH3GLB2Q9NR46 395 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 MYH15Q9Y2K3 1946 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 ZNF280CQ8ND82 737 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 CNKSR2Q8WXI2 1034 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 TNFRSF25Q93038 417 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 CLMNQ96JQ2 1002 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 FTOQ9C0B1 505 aaKnown RBP eCLIP16.9■□□□□ 0.3
CXCL12-201ENST00000343575 PICK1Q9NRD5 415 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 LMBRD1Q9NUN5 540 aa16.9■□□□□ 0.3
CXCL12-201ENST00000343575 TFIP11Q9UBB9 837 aaKnown RBP16.9■□□□□ 0.3
CXCL12-201ENST00000343575 PNMA6FA0A0J9YX94 578 aa16.89■□□□□ 0.29
CXCL12-201ENST00000343575 BACE1P56817 501 aa16.89■□□□□ 0.29
CXCL12-201ENST00000343575 EARS2Q5JPH6 523 aaKnown RBP16.89■□□□□ 0.29
CXCL12-201ENST00000343575 HEATR3Q7Z4Q2 680 aa16.89■□□□□ 0.29
CXCL12-201ENST00000343575 ZNF526Q8TF50 670 aaPredicted RBP16.89■□□□□ 0.29
CXCL12-201ENST00000343575 FEZ1Q99689 392 aa16.89■□□□□ 0.29
CXCL12-201ENST00000343575 FBXO28Q9NVF7 368 aa16.89■□□□□ 0.29
CXCL12-201ENST00000343575 AFG3L2Q9Y4W6 797 aa16.89■□□□□ 0.29
CXCL12-201ENST00000343575 ZBTB5O15062 677 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 SNAP25P60880 206 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 NOM1Q5C9Z4 860 aaKnown RBP16.88■□□□□ 0.29
CXCL12-201ENST00000343575 MYSM1Q5VVJ2 828 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 PDLIM2Q96JY6 352 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 FOXP1Q9H334 677 aaPredicted RBP16.88■□□□□ 0.29
CXCL12-201ENST00000343575 PRR12Q9ULL5 1215 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 NOL7Q9UMY1 257 aaKnown RBP16.88■□□□□ 0.29
CXCL12-201ENST00000343575 DCAF8L1A6NGE4 600 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 TRIM75PA6NK02 468 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 M0R2N6 131 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 XBP1P17861 261 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 IREB2P48200 963 aaKnown RBP16.88■□□□□ 0.29
CXCL12-201ENST00000343575 QRICH1Q2TAL8 776 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 SYDE2Q5VT97 1194 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 BRAPQ7Z569 592 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 LDHDQ86WU2 507 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 NOSTRINQ8IVI9 506 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 LPAR1Q92633 364 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 COA7Q96BR5 231 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 USP28Q96RU2 1077 aa16.88■□□□□ 0.29
CXCL12-201ENST00000343575 SEC63Q9UGP8 760 aaKnown RBP16.88■□□□□ 0.29
CXCL12-201ENST00000343575 SMCHD1A6NHR9 2005 aa16.87■□□□□ 0.29
CXCL12-201ENST00000343575 FAM205CA6NFA0 338 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms