RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SYNPO2Q9UMS6 1093 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.17■■□□□ 1.3
LIME1-201ENST00000309546 IGHDP01880 384 aa23.16■■□□□ 1.3
LIME1-201ENST00000309546 MYCNP04198 464 aaPredicted RBP23.16■■□□□ 1.3
LIME1-201ENST00000309546 MCMDC2Q4G0Z9 681 aa23.16■■□□□ 1.3
LIME1-201ENST00000309546 CHD1LQ86WJ1 897 aa23.16■■□□□ 1.3
LIME1-201ENST00000309546 FEM1BQ9UK73 627 aa23.16■■□□□ 1.3
LIME1-201ENST00000309546 STX8Q9UNK0 236 aa23.16■■□□□ 1.3
LIME1-201ENST00000309546 ZBED4O75132 1171 aa23.15■■□□□ 1.3
LIME1-201ENST00000309546 BMP3P12645 472 aa23.15■■□□□ 1.3
LIME1-201ENST00000309546 NMIQ13287 307 aaPredicted RBP23.15■■□□□ 1.3
LIME1-201ENST00000309546 SENP6Q9GZR1 1112 aaPredicted RBP23.15■■□□□ 1.3
LIME1-201ENST00000309546 PRO3102Q9H379 93 aa23.15■■□□□ 1.3
LIME1-201ENST00000309546 TOMM22Q9NS69 142 aa23.15■■□□□ 1.3
LIME1-201ENST00000309546 SEPT4O43236 478 aa23.14■■□□□ 1.29
LIME1-201ENST00000309546 RANBP6O60518 1105 aaKnown RBP23.14■■□□□ 1.29
LIME1-201ENST00000309546 LRRC26Q2I0M4 334 aa23.14■■□□□ 1.29
LIME1-201ENST00000309546 GJC2Q5T442 439 aaPredicted RBP23.14■■□□□ 1.29
LIME1-201ENST00000309546 RAVER2Q9HCJ3 691 aaKnown RBP23.14■■□□□ 1.29
LIME1-201ENST00000309546 RIPK3Q9Y572 518 aa23.14■■□□□ 1.29
LIME1-201ENST00000309546 TMEM232C9JQI7 657 aa23.13■■□□□ 1.29
LIME1-201ENST00000309546 DNM1LO00429 736 aa23.13■■□□□ 1.29
LIME1-201ENST00000309546 NMT2O60551 498 aa23.13■■□□□ 1.29
LIME1-201ENST00000309546 IKQ13123 557 aaPredicted RBP23.13■■□□□ 1.29
LIME1-201ENST00000309546 ZNF792Q3KQV3 632 aa23.13■■□□□ 1.29
LIME1-201ENST00000309546 PPP4R3BQ5MIZ7 849 aa23.13■■□□□ 1.29
LIME1-201ENST00000309546 ZNF589Q86UQ0 364 aaPredicted RBP23.13■■□□□ 1.29
LIME1-201ENST00000309546 TACC3Q9Y6A5 838 aa23.13■■□□□ 1.29
LIME1-201ENST00000309546 CCDC171Q6TFL3 1326 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 SLC1A4P43007 532 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 NUCB1Q02818 461 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 ALX1Q15699 326 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 RRP12Q5JTH9 1297 aaKnown RBP23.12■■□□□ 1.29
LIME1-201ENST00000309546 PLEKHM2Q8IWE5 1019 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 DDX11Q96FC9 970 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 TINF2Q9BSI4 451 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 SLC38A10Q9HBR0 1119 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 ANAPC4Q9UJX5 808 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 MTMR7Q9Y216 660 aa23.12■■□□□ 1.29
LIME1-201ENST00000309546 SMCHD1A6NHR9 2005 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 KBTBD13C9JR72 458 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 FGAP02671 866 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 HSPD1P10809 573 aaKnown RBP23.11■■□□□ 1.29
LIME1-201ENST00000309546 MCCP23508 829 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 STAT2P52630 851 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 ATN1P54259 1190 aaPredicted RBP23.11■■□□□ 1.29
LIME1-201ENST00000309546 ARRDC4Q8NCT1 418 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 IL17RBQ9NRM6 502 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 PCDH10Q9P2E7 1040 aa23.11■■□□□ 1.29
LIME1-201ENST00000309546 DIS3Q9Y2L1 958 aaKnown RBP23.11■■□□□ 1.29
LIME1-201ENST00000309546 SUPT16HQ9Y5B9 1047 aaKnown RBP23.11■■□□□ 1.29
LIME1-201ENST00000309546 ATP2A1O14983 1001 aa23.1■■□□□ 1.29
LIME1-201ENST00000309546 ORC4O43929 436 aa23.1■■□□□ 1.29
LIME1-201ENST00000309546 HAND2P61296 217 aa23.1■■□□□ 1.29
LIME1-201ENST00000309546 GMCL1Q96IK5 515 aa23.1■■□□□ 1.29
LIME1-201ENST00000309546 HOMER2Q9NSB8 354 aa23.1■■□□□ 1.29
LIME1-201ENST00000309546 SDSP20132 328 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 KCTD1Q719H9 257 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 RASGRP2Q7LDG7 609 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 FAM160B2Q86V87 743 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 TICAM2Q86XR7 235 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 GDF15Q99988 308 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 CNPY2Q9Y2B0 182 aa23.09■■□□□ 1.29
LIME1-201ENST00000309546 A0A1W2PPC1 479 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 TAL1P17542 331 aaPredicted RBP23.08■■□□□ 1.29
LIME1-201ENST00000309546 MAGEA10P43363 369 aaPredicted RBP23.08■■□□□ 1.29
LIME1-201ENST00000309546 OAZ1P54368 228 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 ANKRD35Q8N283 1001 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 CHURC1Q8WUH1 139 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 OSBPL3Q9H4L5 887 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 NRBP1Q9UHY1 535 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 MCM3APO60318 1980 aa23.08■■□□□ 1.29
LIME1-201ENST00000309546 ZMYM6O95789 1325 aa23.08■■□□□ 1.28
LIME1-201ENST00000309546 RARBP10826 455 aa23.07■■□□□ 1.28
LIME1-201ENST00000309546 CCDC96Q2M329 555 aa23.07■■□□□ 1.28
LIME1-201ENST00000309546 STAG1Q8WVM7 1258 aa23.07■■□□□ 1.28
LIME1-201ENST00000309546 XPNPEP3Q9NQH7 507 aa23.07■■□□□ 1.28
LIME1-201ENST00000309546 DIAPH3Q9NSV4 1193 aa23.07■■□□□ 1.28
LIME1-201ENST00000309546 FBXO40Q9UH90 709 aa23.07■■□□□ 1.28
LIME1-201ENST00000309546 LAMA4Q16363 1823 aa23.06■■□□□ 1.28
LIME1-201ENST00000309546 FGRP09769 529 aa23.06■■□□□ 1.28
LIME1-201ENST00000309546 FDX1P10109 184 aa23.06■■□□□ 1.28
LIME1-201ENST00000309546 MFAP1P55081 439 aaKnown RBP23.06■■□□□ 1.28
LIME1-201ENST00000309546 LRRC41Q15345 812 aa23.06■■□□□ 1.28
LIME1-201ENST00000309546 CHST13Q8NET6 341 aa23.06■■□□□ 1.28
LIME1-201ENST00000309546 RANBP2P49792 3224 aaKnown RBP23.05■■□□□ 1.28
LIME1-201ENST00000309546 DNAJC25-GNG10A0A024R161 153 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 ZNF865P0CJ78 1059 aaPredicted RBP23.05■■□□□ 1.28
LIME1-201ENST00000309546 AKR1A1P14550 325 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 RTP1P59025 263 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 SNAP25P60880 206 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 RCSD1Q6JBY9 416 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 CCDC174Q6PII3 467 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 CWC27Q6UX04 472 aaKnown RBP23.05■■□□□ 1.28
LIME1-201ENST00000309546 FERMT2Q96AC1 680 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 LENG1Q96BZ8 264 aaPredicted RBP23.05■■□□□ 1.28
LIME1-201ENST00000309546 AGBL1Q96MI9 1066 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 ZHX1Q9UKY1 873 aaPredicted RBP23.05■■□□□ 1.28
LIME1-201ENST00000309546 ATP11BQ9Y2G3 1177 aa23.05■■□□□ 1.28
LIME1-201ENST00000309546 BMP8BP34820 402 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms