RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 BLZF1Q9H2G9 400 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 CDC23Q9UJX2 597 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 CD2APQ9Y5K6 639 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 NOS1P29475 1434 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 NELFCDQ8IXH7 590 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 APPBP2Q92624 585 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 CASP2P42575 452 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 PPP1R13BQ96KQ4 1090 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 ANLNQ9NQW6 1124 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 NOC2LQ9Y3T9 749 aaKnown RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 NR1I2O75469 434 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 ZC3H15Q8WU90 426 aaKnown RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 POLR3AO14802 1390 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 MAEAQ7L5Y9 396 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 MAD1L1Q9Y6D9 718 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 IRS4O14654 1257 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 S100BP04271 92 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 POLR3CQ9BUI4 534 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 IQGAP2Q13576 1575 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 BFSP1Q12934 665 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 MYOCDQ8IZQ8 938 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 FNBP4Q8N3X1 1017 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 KIFC3Q9BVG8 833 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 CREB3O43889 395 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 KRT40Q6A162 431 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 EPN1Q9Y6I3 576 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 MAGI1Q96QZ7 1491 aaPredicted RBP15.15■□□□□ 0.02
CSPG4-201ENST00000308508 SGSM2O43147 1006 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 IFNAR2P48551 515 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 PCYT1AP49585 367 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 TEX11Q8IYF3 940 aa15.15■□□□□ 0.02
CSPG4-201ENST00000308508 CAPN12Q6ZSI9 719 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 ZCRB1Q8TBF4 217 aaKnown RBP15.14■□□□□ 0.01
CSPG4-201ENST00000308508 FGFR1OP2Q9NVK5 253 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 PCDHB13Q9Y5F0 798 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 MAP3K5Q99683 1374 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 SNX1Q13596 522 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 PHKBQ93100 1093 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 ADGRF5Q8IZF2 1346 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 TTI1O43156 1089 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 VAMP4O75379 141 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 REXO1Q8N1G1 1221 aaKnown RBP15.14■□□□□ 0.01
CSPG4-201ENST00000308508 PARD3Q8TEW0 1356 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 ZFYVE9O95405 1425 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 POC1B-GALNT4F8VUJ3 575 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 CTNND1O60716 968 aaKnown RBP15.14■□□□□ 0.01
CSPG4-201ENST00000308508 PRPSAP1Q14558 356 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 PUM3Q15397 648 aaKnown RBP15.14■□□□□ 0.01
CSPG4-201ENST00000308508 KRT28Q7Z3Y7 464 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 GPAA1O43292 621 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 ADAMTS2O95450 1211 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 ATP6V1E1P36543 226 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 TPTE2Q6XPS3 522 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 FAM173BQ6P4H8 233 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 C16orf87Q6PH81 154 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 RAPH1Q70E73 1250 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 C1orf112Q9NSG2 853 aa15.14■□□□□ 0.01
CSPG4-201ENST00000308508 SBNO1A3KN83 1393 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 OTUD6AQ7L8S5 288 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 ZNF148Q9UQR1 794 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 ACEP12821 1306 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 ALS2CLQ60I27 953 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 NME8Q8N427 588 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 EYA3Q99504 573 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 AZI2Q9H6S1 392 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 ARMCX3Q9UH62 379 aaPredicted RBP15.13■□□□□ 0.01
CSPG4-201ENST00000308508 SAP30BPQ9UHR5 308 aaKnown RBP15.13■□□□□ 0.01
CSPG4-201ENST00000308508 PFKFB1P16118 471 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 ST7Q9NRC1 585 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 PRXQ9BXM0 1461 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 RAP1GDS1P52306 607 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 DZIP3Q86Y13 1208 aaKnown RBP15.13■□□□□ 0.01
CSPG4-201ENST00000308508 GPIHBP1Q8IV16 184 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 TRIM15Q9C019 465 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 PTPN22Q9Y2R2 807 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 GSTA4O15217 222 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 SAT1P21673 171 aa15.13■□□□□ 0.01
CSPG4-201ENST00000308508 RAPGEF3O95398 923 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 YWHAGP61981 247 aaKnown RBP eCLIP15.12■□□□□ 0.01
CSPG4-201ENST00000308508 TNNI3KQ59H18 835 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 FAM133BQ5BKY9 247 aaKnown RBP15.12■□□□□ 0.01
CSPG4-201ENST00000308508 MCTP2Q6DN12 878 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 HACE1Q8IYU2 909 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 NOP53Q9NZM5 478 aaKnown RBP15.12■□□□□ 0.01
CSPG4-201ENST00000308508 FAM8A1Q9UBU6 413 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 SERTAD1Q9UHV2 236 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 FPGT-TNNI3KV9GXZ4 949 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 BRD1O95696 1058 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 PDE1BQ01064 536 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 LRMPQ12912 555 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 KRT82Q9NSB4 513 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 ART3Q13508 389 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 MRFAP1Q9Y605 127 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 ZMYM4Q5VZL5 1548 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 ARHGEF9O43307 516 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 POLR2BP30876 1174 aaKnown RBP15.12■□□□□ 0.01
CSPG4-201ENST00000308508 SSH2Q76I76 1423 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 OATP04181 439 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 NUDCD3Q8IVD9 361 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms