RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 VSIG1Q86XK7 387 aa21.36■■□□□ 1.01
USP48-201ENST00000308271 HINFPQ9BQA5 517 aa21.36■■□□□ 1.01
USP48-201ENST00000308271 B4DLN1 442 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 ADORA1P30542 326 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 FRMD4BQ9Y2L6 1034 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 PTPREP23469 700 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 IFT88Q13099 833 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 CNOT6LQ96LI5 555 aaKnown RBP21.35■■□□□ 1.01
USP48-201ENST00000308271 PUS3Q9BZE2 481 aaKnown RBP21.35■■□□□ 1.01
USP48-201ENST00000308271 PLEKHG1Q9ULL1 1385 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 PCCAP05165 728 aaPredicted RBP21.35■■□□□ 1.01
USP48-201ENST00000308271 SARNPP82979 210 aaKnown RBP21.35■■□□□ 1.01
USP48-201ENST00000308271 ZBED6P86452 979 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 CALCRLQ16602 461 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 GPHNQ9NQX3 736 aaPredicted RBP21.35■■□□□ 1.01
USP48-201ENST00000308271 ST7Q9NRC1 585 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 PARP2Q9UGN5 583 aa21.35■■□□□ 1.01
USP48-201ENST00000308271 KRIT1O00522 736 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 CUEDC2Q9H467 287 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 DDAH1O94760 285 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 NR5A1Q13285 461 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 PPP4R3AQ6IN85 833 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 AMFRQ9UKV5 643 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 ADGRG1Q9Y653 693 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 EMBQ6PCB8 327 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 ANKRD13CQ8N6S4 541 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 LSM14BQ9BX40 385 aaKnown RBP21.34■■□□□ 1.01
USP48-201ENST00000308271 EPC1Q9H2F5 836 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 TSNAXIP1Q2TAA8 658 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 ZNF804AQ7Z570 1209 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 HOMER3Q9NSC5 361 aa21.34■■□□□ 1.01
USP48-201ENST00000308271 STAMBPO95630 424 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 MYOCDQ8IZQ8 938 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 VEZTQ9HBM0 779 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 RIPOR2Q9Y4F9 1068 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 CTSWP56202 376 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 GALNT17Q6IS24 598 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 FUCA2Q9BTY2 467 aa21.33■■□□□ 1.01
USP48-201ENST00000308271 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.33■■□□□ 1.01
USP48-201ENST00000308271 HEXIM1O94992 359 aaKnown RBP21.33■■□□□ 1
USP48-201ENST00000308271 ADD2P35612 726 aa21.33■■□□□ 1
USP48-201ENST00000308271 KRT31Q15323 416 aa21.33■■□□□ 1
USP48-201ENST00000308271 ZNF579Q8NAF0 562 aaKnown RBP21.33■■□□□ 1
USP48-201ENST00000308271 ZBTB38Q8NAP3 1195 aaPredicted RBP21.33■■□□□ 1
USP48-201ENST00000308271 PAGE5Q96GU1 130 aa21.33■■□□□ 1
USP48-201ENST00000308271 MYL1P05976 194 aa21.33■■□□□ 1
USP48-201ENST00000308271 HSPA2P54652 639 aa21.33■■□□□ 1
USP48-201ENST00000308271 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.33■■□□□ 1
USP48-201ENST00000308271 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.33■■□□□ 1
USP48-201ENST00000308271 PCDHB6Q9Y5E3 794 aa21.33■■□□□ 1
USP48-201ENST00000308271 COBLO75128 1261 aa21.32■■□□□ 1
USP48-201ENST00000308271 PCP11498 1178 aaKnown RBP21.32■■□□□ 1
USP48-201ENST00000308271 EEF2P13639 858 aaKnown RBP21.32■■□□□ 1
USP48-201ENST00000308271 C2orf54Q08AI8 447 aa21.32■■□□□ 1
USP48-201ENST00000308271 E2F4Q16254 413 aa21.32■■□□□ 1
USP48-201ENST00000308271 CERS3Q8IU89 383 aa21.32■■□□□ 1
USP48-201ENST00000308271 REXO1Q8N1G1 1221 aaKnown RBP21.32■■□□□ 1
USP48-201ENST00000308271 STMN2Q93045 179 aa21.32■■□□□ 1
USP48-201ENST00000308271 AATFQ9NY61 560 aaKnown RBP eCLIP21.32■■□□□ 1
USP48-201ENST00000308271 PRAMEF22A3QJZ6 481 aa21.32■■□□□ 1
USP48-201ENST00000308271 SETDB2Q96T68 719 aa21.32■■□□□ 1
USP48-201ENST00000308271 PUS7LQ9H0K6 701 aaKnown RBP21.32■■□□□ 1
USP48-201ENST00000308271 GLT8D2Q9H1C3 349 aa21.32■■□□□ 1
USP48-201ENST00000308271 PLCB3Q01970 1234 aa21.32■■□□□ 1
USP48-201ENST00000308271 NNTQ13423 1086 aa21.32■■□□□ 1
USP48-201ENST00000308271 ARMC9Q7Z3E5 817 aa21.32■■□□□ 1
USP48-201ENST00000308271 NELFCDQ8IXH7 590 aa21.32■■□□□ 1
USP48-201ENST00000308271 EPB41L5Q9HCM4 733 aa21.32■■□□□ 1
USP48-201ENST00000308271 GJB4Q9NTQ9 266 aa21.32■■□□□ 1
USP48-201ENST00000308271 OR52Z1P0C646 297 aa21.31■■□□□ 1
USP48-201ENST00000308271 WDR24Q96S15 920 aa21.31■■□□□ 1
USP48-201ENST00000308271 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.31■■□□□ 1
USP48-201ENST00000308271 USP17L12C9JPN9 530 aa21.31■■□□□ 1
USP48-201ENST00000308271 USP17L21D6R901 530 aa21.31■■□□□ 1
USP48-201ENST00000308271 TFAP4Q01664 338 aa21.31■■□□□ 1
USP48-201ENST00000308271 NEDD9Q14511 834 aa21.31■■□□□ 1
USP48-201ENST00000308271 KRT12Q99456 494 aa21.31■■□□□ 1
USP48-201ENST00000308271 CTTNBP2NLQ9P2B4 639 aa21.31■■□□□ 1
USP48-201ENST00000308271 ORAI2Q96SN7 254 aa21.31■■□□□ 1
USP48-201ENST00000308271 TULP4Q9NRJ4 1543 aa21.31■■□□□ 1
USP48-201ENST00000308271 INF2Q27J81 1249 aa21.31■■□□□ 1
USP48-201ENST00000308271 TRMT1LQ7Z2T5 733 aaKnown RBP21.31■■□□□ 1
USP48-201ENST00000308271 SRLQ86TD4 932 aa21.31■■□□□ 1
USP48-201ENST00000308271 BANK1Q8NDB2 785 aa21.31■■□□□ 1
USP48-201ENST00000308271 P2RX5Q93086 422 aa21.31■■□□□ 1
USP48-201ENST00000308271 NT5C3AQ9H0P0 336 aa21.31■■□□□ 1
USP48-201ENST00000308271 WDR19Q8NEZ3 1342 aa21.3■■□□□ 1
USP48-201ENST00000308271 ERVV-2B6SEH9 535 aa21.3■■□□□ 1
USP48-201ENST00000308271 PDE8BO95263 885 aa21.3■■□□□ 1
USP48-201ENST00000308271 HIBADHP31937 336 aaKnown RBP21.3■■□□□ 1
USP48-201ENST00000308271 ADCY7P51828 1080 aa21.3■■□□□ 1
USP48-201ENST00000308271 RASSF7Q02833 373 aa21.3■■□□□ 1
USP48-201ENST00000308271 MICAL1Q8TDZ2 1067 aa21.3■■□□□ 1
USP48-201ENST00000308271 CCDC169A6NNP5 214 aa21.3■■□□□ 1
USP48-201ENST00000308271 NEBLO76041 1014 aa21.3■■□□□ 1
USP48-201ENST00000308271 EHHADHQ08426 723 aa21.3■■□□□ 1
USP48-201ENST00000308271 DNAJC10Q8IXB1 793 aa21.3■■□□□ 1
USP48-201ENST00000308271 NYXQ9GZU5 481 aa21.3■■□□□ 1
USP48-201ENST00000308271 THAP9Q9H5L6 903 aa21.3■■□□□ 1
USP48-201ENST00000308271 L2HGDHQ9H9P8 463 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms