RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	TMA46	Q12000	345 aa	Known RBP	10.71	□□□□□ -0.69
VPS60	YDR486C	UBX3	Q12229	455 aa		10.71	□□□□□ -0.69
VPS60	YDR486C	COX6	P00427	148 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	SEC53	P07283	254 aa	Known RBP	10.7	□□□□□ -0.7
VPS60	YDR486C	PMT1	P33775	817 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	STB6	P36085	766 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	DCW1	P36091	449 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	HSM3	P38348	480 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	MUP3	P38734	546 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	NPY1	P53164	384 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	RPC11	Q04307	110 aa	Predicted RBP	10.7	□□□□□ -0.7
VPS60	YDR486C	CIA1	Q05583	330 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	MDY2	Q12285	212 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	STB3	Q12427	513 aa		10.7	□□□□□ -0.7
VPS60	YDR486C	GAL11	P19659	1081 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	VAC17	P25591	423 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	GUT1	P32190	709 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	NIP1	P32497	812 aa	Known RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	SPS19	P32573	292 aa	Known RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	LRG1	P35688	1017 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	GDH3	P39708	457 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	IRR1	P40541	1150 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	AXL1	P40851	1208 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	ARC1	P46672	376 aa	Known RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	TEL2	P53038	688 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	BIO5	P53744	561 aa	Known RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	TDA7	P53882	636 aa	Predicted RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	SUB1	P54000	292 aa	Known RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	OSH6	Q02201	448 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	BLS1	Q06071	122 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	YPR084W	Q06821	456 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	NOB1	Q08444	459 aa	Known RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	TGL5	Q12043	749 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	UPC2	Q12151	913 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	ICT1	Q12385	394 aa		10.69	□□□□□ -0.7
VPS60	YDR486C	NOT5	Q12514	560 aa	Predicted RBP	10.69	□□□□□ -0.7
VPS60	YDR486C	YPR089W	O13585	888 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	APA1	P16550	321 aa	Known RBP	10.68	□□□□□ -0.7
VPS60	YDR486C	RPC19	P28000	142 aa	Known RBP	10.68	□□□□□ -0.7
VPS60	YDR486C	SFP1	P32432	683 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	PTM1	P32857	523 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	PRP18	P33411	251 aa	Predicted RBP	10.68	□□□□□ -0.7
VPS60	YDR486C	AIF1	P52923	378 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	VPS16	Q03308	798 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	TVP15	Q03860	143 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	ENT4	Q07872	247 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	BUD7	Q08754	746 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	YPL247C	Q12523	523 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	HAA1	Q12753	694 aa	Known RBP	10.68	□□□□□ -0.7
VPS60	YDR486C	YPT6	Q99260	215 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	FAB1	P34756	2278 aa		10.68	□□□□□ -0.7
VPS60	YDR486C	MRE11	P32829	692 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	SPT23	P35210	1082 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	VRP1	P37370	817 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	10.67	□□□□□ -0.7	not detected
VPS60	YDR486C	ARP1	P38696	384 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	EFM1	P38732	585 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	PCL5	P38794	229 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	STN1	P38960	494 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	SWC4	P53201	476 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	AQR1	P53943	586 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	TAF12	Q03761	539 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	SPO20	Q04359	397 aa		10.67	□□□□□ -0.7
VPS60	YDR486C	SMF3	Q12078	473 aa	Predicted RBP	10.67	□□□□□ -0.7
VPS60	YDR486C	RIB2	Q12362	591 aa	Known RBP	10.67	□□□□□ -0.7
VPS60	YDR486C	RHO2	P06781	192 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	RAD3	P06839	778 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	SBP1	P10080	294 aa	Known RBP	10.66	□□□□□ -0.7
VPS60	YDR486C	HSC82	P15108	705 aa	Known RBP	10.66	□□□□□ -0.7
VPS60	YDR486C	RPB4	P20433	221 aa	Predicted RBP	10.66	□□□□□ -0.7
VPS60	YDR486C	YCR090C	P25654	182 aa	Known RBP	10.66	□□□□□ -0.7
VPS60	YDR486C	DEP1	P31385	405 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	THI80	P35202	319 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	DBP8	P38719	431 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	PRM2	P40534	656 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	GCD14	P46959	383 aa	Predicted RBP	10.66	□□□□□ -0.7
VPS60	YDR486C	NUP84	P52891	726 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	YNR014W	P53719	212 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	NHP10	Q03435	203 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	GOT1	Q03554	138 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	RCO1	Q04779	684 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	SEC10	Q06245	871 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	VTA1	Q06263	330 aa		10.66	□□□□□ -0.7
VPS60	YDR486C	HBT1	Q07653	1046 aa	Known RBP	10.66	□□□□□ -0.7
VPS60	YDR486C	PRP16	P15938	1071 aa	Predicted RBP	10.65	□□□□□ -0.7
VPS60	YDR486C	EPT1	P22140	391 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	VAN1	P23642	535 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	OXP1	P28273	1286 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	TFC3	P34111	1160 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	SEC31	P38968	1273 aa	Known RBP	10.65	□□□□□ -0.7
VPS60	YDR486C	YHB1	P39676	399 aa	Known RBP	10.65	□□□□□ -0.7
VPS60	YDR486C	DAN4	P47179	1161 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	RMI1	Q02685	241 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	GNT1	Q12096	491 aa		10.65	□□□□□ -0.7
VPS60	YDR486C	MEX67	Q99257	599 aa	Known RBP	10.65	□□□□□ -0.7
VPS60	YDR486C	SEC15	P22224	910 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	NPP1	P25353	742 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	SNT1	P25357	1226 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	DSF2	P38213	736 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	YHR078W	P38799	552 aa		10.64	□□□□□ -0.71

Retrieved 100 of 5,963 RNA–protein pairs in 33.5 ms