RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 RXRAP19793 462 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 SLC1A4P43007 532 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 APOA5Q6Q788 366 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 KCTD1Q719H9 257 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 CATIPQ7Z7H3 387 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 IFNL1Q8IU54 200 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 DCAF4Q8WV16 495 aa23.41■■□□□ 1.34
SHKBP1-222ENST00000600320 PDHXO00330 501 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 DDAH1O94760 285 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 BMP3P12645 472 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 INHBEP58166 350 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 CCDC96Q2M329 555 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 TTBK2Q6IQ55 1244 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 CATSPERGQ6ZRH7 1159 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 NUP133Q8WUM0 1156 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 SLC12A7Q9Y666 1083 aa23.4■■□□□ 1.34
SHKBP1-222ENST00000600320 USP17L15C9J2P7 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L13C9JLJ4 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L11C9JVI0 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L18D6R9N7 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L22D6RA61 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L17D6RBQ6 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L19D6RCP7 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L20D6RJB6 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 GOLGA8HP0CJ92 632 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 HOXA7P31268 230 aaPredicted RBP23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 EVCP57679 992 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 ZNF543Q08ER8 600 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 USP17L24Q0WX57 530 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 GRM4Q14833 912 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 NOL8Q76FK4 1167 aaKnown RBP23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 GPCPD1Q9NPB8 672 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 FBXO28Q9NVF7 368 aa23.39■■□□□ 1.33
SHKBP1-222ENST00000600320 MICU3Q86XE3 530 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 CCDC144CPQ8IYA2 1237 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 STAG2Q8N3U4 1231 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 TANGO6Q9C0B7 1094 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 TPCN1Q9ULQ1 816 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 ISY1Q9ULR0 285 aaKnown RBP23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 NAP1L2Q9ULW6 460 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 HPS5Q9UPZ3 1129 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 PCNTO95613 3336 aa23.38■■□□□ 1.33
SHKBP1-222ENST00000600320 ZBTB43O43298 467 aa23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 REM2Q8IYK8 340 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 ASCC2Q9H1I8 757 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 CPVLQ9H3G5 476 aa23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 MAD2L2Q9UI95 211 aa23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 SLC45A1Q9Y2W3 748 aa23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 RLFQ13129 1914 aa23.37■■□□□ 1.33
SHKBP1-222ENST00000600320 PALM3A6NDB9 673 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 GOLGA8BA8MQT2 603 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 TMEM232C9JQI7 657 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 CD2BP2O95400 341 aaKnown RBP23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 PARP1P09874 1014 aaKnown RBP23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 CYP2C8P10632 490 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 PDIA3P30101 505 aaKnown RBP23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 ASPRV1Q53RT3 343 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 SYNE3Q6ZMZ3 975 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 JMYQ8N9B5 988 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 PARP14Q460N5 1801 aa23.36■■□□□ 1.33
SHKBP1-222ENST00000600320 FLOT1O75955 427 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 LARGE1O95461 756 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 OSBPP22059 807 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 SLC16A2P36021 539 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 IRX3P78415 501 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 PABPC4Q13310 644 aaKnown RBP eCLIP23.35■■□□□ 1.331e-9■■■■□ 22.8
SHKBP1-222ENST00000600320 ANKRD1Q15327 319 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 SLC35G1Q2M3R5 365 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 POTEEQ6S8J3 1075 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 MAP3K14Q99558 947 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 P2RX7Q99572 595 aaKnown RBP23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 UBA5Q9GZZ9 404 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 ZCCHC17Q9NP64 241 aaKnown RBP23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 FAM217BQ9NTX9 383 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 FEM1BQ9UK73 627 aa23.35■■□□□ 1.33
SHKBP1-222ENST00000600320 GOLGA8AA7E2F4 631 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 CALM1P0DP23 149 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 CALM2P0DP24 149 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 CALM3P0DP25 149 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 DSG3P32926 999 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 TAF1CQ15572 869 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 GPATCH4Q5T3I0 446 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 OTUD7BQ6GQQ9 843 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 SAMD1Q6SPF0 538 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 BTNL9Q6UXG8 535 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 FANCBQ8NB91 859 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 CTCFLQ8NI51 663 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 ATG4CQ96DT6 458 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 PPP1R9AQ9ULJ8 1098 aa23.34■■□□□ 1.33
SHKBP1-222ENST00000600320 NID2Q14112 1375 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 SPDYE16A6NNV3 312 aaPredicted RBP23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 PLEKHA8P1O95397 391 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 CDC27P30260 824 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 RCAN1P53805 252 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 COG2Q14746 738 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 RTN1Q16799 776 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 NBPF11Q86T75 865 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 ZNF274Q96GC6 653 aaPredicted RBP23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 SLF1Q9BQI6 1058 aa23.33■■□□□ 1.33
SHKBP1-222ENST00000600320 PNMA3Q9UL41 463 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms