RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 TGFB2P61812 414 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 ATP2C1P98194 919 aaPredicted RBP11.87□□□□□ -0.51
VPS25-203ENST00000589520 IQCB1Q15051 598 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 NPY5RQ15761 445 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 GPATCH4Q5T3I0 446 aaKnown RBP11.87□□□□□ -0.51
VPS25-203ENST00000589520 KRT25Q7Z3Z0 450 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 TRIML1Q8N9V2 468 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 MKL1Q969V6 931 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 TRIM34Q9BYJ4 488 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 GLT8D2Q9H1C3 349 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 RIOX1Q9H6W3 641 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 DACH1Q9UI36 760 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 HDAC9Q9UKV0 1011 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 SYNPO2Q9UMS6 1093 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 ZKSCAN5Q9Y2L8 839 aa11.87□□□□□ -0.51
VPS25-203ENST00000589520 SNED1Q8TER0 1413 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 CCDC194A0A1B0GVG4 234 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 IKBKBO14920 756 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 PPIP5K2O43314 1243 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 ZNF500O60304 480 aaPredicted RBP11.86□□□□□ -0.51
VPS25-203ENST00000589520 CHRNA5P30532 468 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 SCNN1DP51172 638 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 RBM5P52756 815 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS25-203ENST00000589520 SEMA3FQ13275 785 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 SLC4A8Q2Y0W8 1093 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 COL13A1Q5TAT6 717 aaPredicted RBP11.86□□□□□ -0.51
VPS25-203ENST00000589520 PPP1R18Q6NYC8 613 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 OLFM4Q6UX06 510 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 LUZP1Q86V48 1076 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 METTL16Q86W50 562 aaKnown RBP11.86□□□□□ -0.51
VPS25-203ENST00000589520 STAG2Q8N3U4 1231 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 ZMYND12Q9H0C1 365 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 KANSL2Q9H9L4 492 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 TMOD2Q9NZR1 351 aa11.86□□□□□ -0.51
VPS25-203ENST00000589520 DDX60LQ5H9U9 1706 aaKnown RBP11.86□□□□□ -0.51
VPS25-203ENST00000589520 COL2A1P02458 1487 aaPredicted RBP11.85□□□□□ -0.51
VPS25-203ENST00000589520 M0R2N6 131 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 SMC2O95347 1197 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 PDHBP11177 359 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 SHMT1P34896 483 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 LONP1P36776 959 aaKnown RBP11.85□□□□□ -0.51
VPS25-203ENST00000589520 PLCB2Q00722 1185 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 NT5DC1Q5TFE4 455 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 PIK3AP1Q6ZUJ8 805 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 KIAA0825Q8IV33 1275 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 TEX2Q8IWB9 1127 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 SHISA4Q96DD7 197 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 MRFAP1L1Q96HT8 127 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 CLIC6Q96NY7 704 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 TRIM5Q9C035 493 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 DDX4Q9NQI0 724 aaKnown RBP11.85□□□□□ -0.51
VPS25-203ENST00000589520 NYAP2Q9P242 653 aa11.85□□□□□ -0.51
VPS25-203ENST00000589520 COL11A2P13942 1736 aaPredicted RBP11.84□□□□□ -0.51
VPS25-203ENST00000589520 hCG_1642624A0A1W2PR95 340 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 STXBP3O00186 592 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 CYTH3O43739 400 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 AKR1B1P15121 316 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 ATP2B1P20020 1258 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 TXLNAP40222 546 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 PRPHP41219 470 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 AOC3Q16853 763 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 WWC2Q6AWC2 1192 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 TATDN1Q6P1N9 297 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 RSBN1LQ6PCB5 846 aaPredicted RBP11.84□□□□□ -0.51
VPS25-203ENST00000589520 HEATR3Q7Z4Q2 680 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 PLA2G4DQ86XP0 818 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 MLKLQ8NB16 471 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 CSRNP2Q9H175 543 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 RRAGDQ9NQL2 400 aaPredicted RBP11.84□□□□□ -0.51
VPS25-203ENST00000589520 CLIP2Q9UDT6 1046 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 PCDHA6Q9UN73 950 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 PCDHA8Q9Y5H6 950 aa11.84□□□□□ -0.51
VPS25-203ENST00000589520 GOLGB1Q14789 3259 aaKnown RBP11.84□□□□□ -0.51
VPS25-203ENST00000589520 ATRNL1Q5VV63 1379 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 PNMA6FA0A0J9YX94 578 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 SMCO2A6NFE2 343 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 C21orf2O43822 256 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 NEMFO60524 1076 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 VIL1P09327 827 aaKnown RBP11.83□□□□□ -0.52
VPS25-203ENST00000589520 SLFN14P0C7P3 912 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 SARSP49591 514 aaKnown RBP11.83□□□□□ -0.52
VPS25-203ENST00000589520 ZNF75DP51815 510 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 NAPAP54920 295 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 MDM2Q00987 491 aaPredicted RBP11.83□□□□□ -0.52
VPS25-203ENST00000589520 ZNF543Q08ER8 600 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 PTGDRQ13258 359 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 POSTNQ15063 836 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 ZNF174Q15697 407 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 LONRF3Q496Y0 759 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 CERKLQ49MI3 558 aaPredicted RBP11.83□□□□□ -0.52
VPS25-203ENST00000589520 FKBP1CQ5VVH2 108 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 MCTP2Q6DN12 878 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 USP17L2Q6R6M4 530 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 TMEM179Q6ZVK1 233 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 DHX40Q8IX18 779 aaKnown RBP11.83□□□□□ -0.52
VPS25-203ENST00000589520 OGFOD1Q8N543 542 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 IQUBQ8NA54 791 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 AGBL3Q8NEM8 1001 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 DCAF4Q8WV16 495 aa11.83□□□□□ -0.52
VPS25-203ENST00000589520 SMARCE1Q969G3 411 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms