RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PTPN22Q9Y2R2 807 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 RABGAP1Q9Y3P9 1069 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 RBM8AQ9Y5S9 174 aaKnown RBP11.05□□□□□ -0.64
LDLR-211ENST00000560173 TAF6LQ9Y6J9 622 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 MYPNQ86TC9 1320 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 B4E1Z4 1266 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 KDM4AO75164 1064 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 PRMT2P55345 433 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 SLFN13Q68D06 897 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 RCSD1Q6JBY9 416 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 CASC1Q6TDU7 716 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 ATG4CQ96DT6 458 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 KRT23Q9C075 422 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 CNNM2Q9H8M5 875 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 ANO2Q9NQ90 1003 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 FBXO28Q9NVF7 368 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 HOXC10Q9NYD6 342 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 BTBD7Q9P203 1132 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 SRRDQ9UH36 339 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 PPP1R9AQ9ULJ8 1098 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 PTCH2Q9Y6C5 1203 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 PARP14Q460N5 1801 aa11.04□□□□□ -0.64
LDLR-211ENST00000560173 BRCA2P51587 3418 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 TNPO2O14787 897 aaKnown RBP11.03□□□□□ -0.64
LDLR-211ENST00000560173 TOP1P11387 765 aaKnown RBP11.03□□□□□ -0.64
LDLR-211ENST00000560173 HOXD10P28358 340 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 PRKCZQ05513 592 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 Q3C1V9 767 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 STOX1Q6ZVD7 989 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 MB21D1Q8N884 522 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 GMCL1Q96IK5 515 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 SLF1Q9BQI6 1058 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 TMEM47Q9BQJ4 181 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 PORCNQ9H237 461 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 ADAMTS5Q9UNA0 930 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 MGAMO43451 1857 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 SZT2Q5T011 3432 aa11.03□□□□□ -0.64
LDLR-211ENST00000560173 E7EWF7 191 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 BMP3P12645 472 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 MAPK4P31152 587 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 CCNA1P78396 465 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 RASGRP2Q7LDG7 609 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 IQCA1Q86XH1 822 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 COA7Q96BR5 231 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 TTC14Q96N46 770 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 ZKSCAN3Q9BRR0 538 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 ZSWIM5Q9P217 1185 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 GABRQQ9UN88 632 aa11.02□□□□□ -0.65
LDLR-211ENST00000560173 DOCK3Q8IZD9 2030 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 VWA5AO00534 786 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 SLC27A2O14975 620 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 MCCP23508 829 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 SLC1A4P43007 532 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 FLT3LGP49771 235 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 TRDNQ13061 729 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 CCDC178Q5BJE1 867 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 CREB3L3Q68CJ9 461 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 SAMD1Q6SPF0 538 aaPredicted RBP11.01□□□□□ -0.65
LDLR-211ENST00000560173 CYB5R4Q7L1T6 521 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 DGKHQ86XP1 1220 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 ENAHQ8N8S7 591 aaPredicted RBP11.01□□□□□ -0.65
LDLR-211ENST00000560173 REPS2Q8NFH8 660 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 DCAF4Q8WV16 495 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 ANKS1AQ92625 1134 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 ARMC5Q96C12 935 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 ZSCAN10Q96SZ4 725 aaPredicted RBP11.01□□□□□ -0.65
LDLR-211ENST00000560173 MOV10L1Q9BXT6 1211 aaKnown RBP11.01□□□□□ -0.65
LDLR-211ENST00000560173 SPATC1LQ9H0A9 340 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 FEM1BQ9UK73 627 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 GJD2Q9UKL4 321 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 TNKSO95271 1327 aa11.01□□□□□ -0.65
LDLR-211ENST00000560173 KIAA0100Q14667 2235 aaKnown RBP11□□□□□ -0.65
LDLR-211ENST00000560173 TMEM232C9JQI7 657 aa11□□□□□ -0.65
LDLR-211ENST00000560173 PLA2G6O60733 806 aa11□□□□□ -0.65
LDLR-211ENST00000560173 IRF5Q13568 498 aa11□□□□□ -0.65
LDLR-211ENST00000560173 TMEM132BQ14DG7 1078 aa11□□□□□ -0.65
LDLR-211ENST00000560173 NECTIN1Q15223 517 aa11□□□□□ -0.65
LDLR-211ENST00000560173 KCTD1Q719H9 257 aa11□□□□□ -0.65
LDLR-211ENST00000560173 GPR142Q7Z601 462 aa11□□□□□ -0.65
LDLR-211ENST00000560173 PLEKHH3Q7Z736 793 aa11□□□□□ -0.65
LDLR-211ENST00000560173 RALYLQ86SE5 291 aaKnown RBP11□□□□□ -0.65
LDLR-211ENST00000560173 FAM160B2Q86V87 743 aa11□□□□□ -0.65
LDLR-211ENST00000560173 MB21D2Q8IYB1 491 aaPredicted RBP11□□□□□ -0.65
LDLR-211ENST00000560173 PRPF38AQ8NAV1 312 aaKnown RBP11□□□□□ -0.65
LDLR-211ENST00000560173 SHCBP1Q8NEM2 672 aa11□□□□□ -0.65
LDLR-211ENST00000560173 NCOA7Q8NI08 942 aa11□□□□□ -0.65
LDLR-211ENST00000560173 RAET1EQ8TD07 263 aa11□□□□□ -0.65
LDLR-211ENST00000560173 KIFC2Q96AC6 838 aa11□□□□□ -0.65
LDLR-211ENST00000560173 CHMP4CQ96CF2 233 aa11□□□□□ -0.65
LDLR-211ENST00000560173 UBAC1Q9BSL1 405 aa11□□□□□ -0.65
LDLR-211ENST00000560173 ZNF214Q9UL59 606 aaPredicted RBP11□□□□□ -0.65
LDLR-211ENST00000560173 POTEFA5A3E0 1075 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 SNHG28P0DPA3 235 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 PDHBP11177 359 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 STAT2P52630 851 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 ANTXR2P58335 489 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 SEC23AQ15436 765 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 CCDC96Q2M329 555 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 SLC9C1Q4G0N8 1177 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 MORN1Q5T089 497 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms