RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 PRELPP51888 382 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 EIF4A1P60842 406 aaKnown RBP9.6□□□□□ -0.87
SPG11-213ENST00000558988 WDR43Q15061 677 aaKnown RBP eCLIP9.6□□□□□ -0.87
SPG11-213ENST00000558988 CPSF6Q16630 551 aaKnown RBP eCLIP9.6□□□□□ -0.87
SPG11-213ENST00000558988 PRPF40BQ6NWY9 871 aaKnown RBP9.6□□□□□ -0.87
SPG11-213ENST00000558988 KIF6Q6ZMV9 814 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 KDM3BQ7LBC6 1761 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 TIAM2Q8IVF5 1701 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 B8ZZF3 427 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 ANXA1P04083 346 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 HTRA3P83110 453 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 TMEM132AQ24JP5 1023 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 TTLL7Q6ZT98 887 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 LARGE2Q8N3Y3 721 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 KLHL23Q8NBE8 558 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 MASTLQ96GX5 879 aa9.59□□□□□ -0.87
SPG11-213ENST00000558988 SLX4Q8IY92 1834 aa9.59□□□□□ -0.88
SPG11-213ENST00000558988 MYBBP1AQ9BQG0 1328 aaKnown RBP9.58□□□□□ -0.88
SPG11-213ENST00000558988 PALM3A6NDB9 673 aaPredicted RBP9.58□□□□□ -0.88
SPG11-213ENST00000558988 SRGNP10124 158 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 SOX18P35713 384 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 BUD31P41223 144 aaPredicted RBP9.58□□□□□ -0.88
SPG11-213ENST00000558988 DGKZQ13574 1117 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 SGO2Q562F6 1265 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 STYK1Q6J9G0 422 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 OLFM4Q6UX06 510 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 CLEC4GQ6UXB4 293 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 TPTE2Q6XPS3 522 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 OGFOD1Q8N543 542 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 ZNF428Q96B54 188 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 TAOK3Q9H2K8 898 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 ALG2Q9H553 416 aa9.58□□□□□ -0.88
SPG11-213ENST00000558988 GOLGB1Q14789 3259 aaKnown RBP9.58□□□□□ -0.88
SPG11-213ENST00000558988 TCERG1O14776 1098 aaKnown RBP9.57□□□□□ -0.88
SPG11-213ENST00000558988 OPLAHO14841 1288 aa9.57□□□□□ -0.88
SPG11-213ENST00000558988 CYP26A1O43174 497 aa9.57□□□□□ -0.88
SPG11-213ENST00000558988 NPR1P16066 1061 aa9.57□□□□□ -0.88
SPG11-213ENST00000558988 CDC27P30260 824 aa9.57□□□□□ -0.88
SPG11-213ENST00000558988 TMPOP42166 694 aaKnown RBP9.57□□□□□ -0.88
SPG11-213ENST00000558988 LMOD3Q0VAK6 560 aa9.57□□□□□ -0.88
SPG11-213ENST00000558988 AIMP1Q12904 312 aaKnown RBP9.57□□□□□ -0.88
SPG11-213ENST00000558988 ABCC12Q96J65 1359 aa9.57□□□□□ -0.88
SPG11-213ENST00000558988 TNRC6CQ9HCJ0 1690 aaKnown RBP9.57□□□□□ -0.88
SPG11-213ENST00000558988 MAP3K15Q6ZN16 1313 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 GLTPD2A6NH11 291 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 DKK1O94907 266 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 KRT24Q2M2I5 525 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 ADAMTSL4Q6UY14 1074 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 SIX5Q8N196 739 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 RPGRQ92834 1020 aaKnown RBP9.56□□□□□ -0.88
SPG11-213ENST00000558988 KLHDC7BQ96G42 594 aa9.56□□□□□ -0.88
SPG11-213ENST00000558988 NUP98P52948 1817 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 BIN1O00499 593 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 GAS2O43903 313 aaKnown RBP9.55□□□□□ -0.88
SPG11-213ENST00000558988 VEGFAP15692 232 aaPredicted RBP9.55□□□□□ -0.88
SPG11-213ENST00000558988 ATP11AP98196 1134 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 PROSER3Q2NL68 480 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 CCDC93Q567U6 631 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 CEP135Q66GS9 1140 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 FDX2Q6P4F2 183 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 CMTR1Q8N1G2 835 aaKnown RBP9.55□□□□□ -0.88
SPG11-213ENST00000558988 ZNF594Q96JF6 807 aaPredicted RBP9.55□□□□□ -0.88
SPG11-213ENST00000558988 KRTAP9-8Q9BYQ0 159 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 NYXQ9GZU5 481 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 RNF208Q9H0X6 261 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 ZNF277Q9NRM2 450 aaPredicted RBP9.55□□□□□ -0.88
SPG11-213ENST00000558988 FER1L6Q2WGJ9 1857 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 UBN2Q6ZU65 1347 aa9.55□□□□□ -0.88
SPG11-213ENST00000558988 ERVV-1B6SEH8 477 aa9.54□□□□□ -0.88
SPG11-213ENST00000558988 DDNO94850 711 aaPredicted RBP9.54□□□□□ -0.88
SPG11-213ENST00000558988 SOGA3Q5TF21 947 aa9.54□□□□□ -0.88
SPG11-213ENST00000558988 SUSD4Q5VX71 490 aa9.54□□□□□ -0.88
SPG11-213ENST00000558988 FAM117BQ6P1L5 589 aa9.54□□□□□ -0.88
SPG11-213ENST00000558988 SMC1BQ8NDV3 1235 aa9.54□□□□□ -0.88
SPG11-213ENST00000558988 RUNDC1Q96C34 613 aa9.54□□□□□ -0.88
SPG11-213ENST00000558988 WDR90Q96KV7 1748 aa9.53□□□□□ -0.88
SPG11-213ENST00000558988 ARFGEF2Q9Y6D5 1785 aa9.53□□□□□ -0.88
SPG11-213ENST00000558988 FSTL1Q12841 308 aa9.53□□□□□ -0.88
SPG11-213ENST00000558988 XAGE3Q8WTP9 111 aa9.53□□□□□ -0.88
SPG11-213ENST00000558988 SLC38A3Q99624 504 aa9.53□□□□□ -0.88
SPG11-213ENST00000558988 METTL22Q9BUU2 404 aaPredicted RBP9.53□□□□□ -0.88
SPG11-213ENST00000558988 LTBP3Q9NS15 1303 aa9.53□□□□□ -0.88
SPG11-213ENST00000558988 USP17L3A6NCW0 530 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 USP17L4A6NCW7 530 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 ALDH1B1P30837 517 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 FKBP4Q02790 459 aaKnown RBP eCLIP9.52□□□□□ -0.89
SPG11-213ENST00000558988 USP17L2Q6R6M4 530 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 COPS6Q7L5N1 327 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 USP17L1Q7RTZ2 530 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 PPP1R42Q7Z4L9 355 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 CILP2Q8IUL8 1156 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 PLEKHM2Q8IWE5 1019 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 RGL4Q8IZJ4 473 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 PRKRIP1Q9H875 184 aaPredicted RBP9.52□□□□□ -0.89
SPG11-213ENST00000558988 CHPF2Q9P2E5 772 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 RBM19Q9Y4C8 960 aaKnown RBP9.52□□□□□ -0.89
SPG11-213ENST00000558988 DICER1Q9UPY3 1922 aaKnown RBP9.52□□□□□ -0.89
SPG11-213ENST00000558988 ZNF541Q9H0D2 1346 aa9.52□□□□□ -0.89
SPG11-213ENST00000558988 NTSR2O95665 410 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 EPHA1P21709 976 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms