RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 PPP1R9AQ9ULJ8 1098 aa11.15□□□□□ -0.62
YBX3-218ENST00000546298 ADAMTS5Q9UNA0 930 aa11.15□□□□□ -0.62
YBX3-218ENST00000546298 CTDP1Q9Y5B0 961 aaPredicted RBP11.15□□□□□ -0.62
YBX3-218ENST00000546298 MYH1P12882 1939 aa11.15□□□□□ -0.62
YBX3-218ENST00000546298 FOCADQ5VW36 1801 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 F5H6K3 240 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 VWA5AO00534 786 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 PRDM1O75626 825 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 TTLL1O95922 423 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 TSPY3P0CV98 308 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 TSPY8P0CW00 308 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 CNGA1P29973 690 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 HOXD11P31277 338 aaPredicted RBP11.14□□□□□ -0.63
YBX3-218ENST00000546298 PDE1AP54750 535 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 KLRC3Q07444 240 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 PPARAQ07869 468 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 KCTD2Q14681 263 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 LHX8Q68G74 356 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 RIOX2Q8IUF8 465 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 NEDD1Q8NHV4 660 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 MKL1Q969V6 931 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 SEC62Q99442 399 aaKnown RBP11.14□□□□□ -0.63
YBX3-218ENST00000546298 SLF1Q9BQI6 1058 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 HELLSQ9NRZ9 838 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 FLRT1Q9NZU1 646 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 CLIP2Q9UDT6 1046 aa11.14□□□□□ -0.63
YBX3-218ENST00000546298 DDX20Q9UHI6 824 aaKnown RBP11.14□□□□□ -0.63
YBX3-218ENST00000546298 MYO5AQ9Y4I1 1855 aaKnown RBP11.14□□□□□ -0.63
YBX3-218ENST00000546298 SALL3Q9BXA9 1300 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 IGKV6D-41A0A0C4DH26 115 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 ZBED4O75132 1171 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 NDUFB10O96000 172 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 CYP2C19P33261 490 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 TMEM132BQ14DG7 1078 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 PRPF38AQ8NAV1 312 aaKnown RBP11.13□□□□□ -0.63
YBX3-218ENST00000546298 MMP19Q99542 508 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 FBXO28Q9NVF7 368 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 MTMR4Q9NYA4 1195 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 NRBP1Q9UHY1 535 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 ATAD5Q96QE3 1844 aa11.13□□□□□ -0.63
YBX3-218ENST00000546298 A0A1W2PPC1 479 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 COBLO75128 1261 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 FDX1P10109 184 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 CYBAP13498 195 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 MNX1P50219 401 aaPredicted RBP11.12□□□□□ -0.63
YBX3-218ENST00000546298 TFAP4Q01664 338 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 ARRDC4Q8NCT1 418 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 GMCL1P1Q8NEA9 526 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 CEP95Q96GE4 821 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 TEX13BQ9BXU2 312 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 FEM1BQ9UK73 627 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 DIS3Q9Y2L1 958 aaKnown RBP11.12□□□□□ -0.63
YBX3-218ENST00000546298 CDK5RAP2Q96SN8 1893 aa11.12□□□□□ -0.63
YBX3-218ENST00000546298 DDX60LQ5H9U9 1706 aaKnown RBP11.12□□□□□ -0.63
YBX3-218ENST00000546298 SEPT4O43236 478 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 IGHA2P01877 340 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 COL6A1P12109 1028 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 FXR1P51114 621 aaKnown RBP eCLIP11.11□□□□□ -0.63
YBX3-218ENST00000546298 ALX1Q15699 326 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 MCMDC2Q4G0Z9 681 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 SLFN13Q68D06 897 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 SMC5Q8IY18 1101 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 C7orf61Q8IZ16 206 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 REPS2Q8NFH8 660 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 MAML3Q96JK9 1138 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 NUP88Q99567 741 aaPredicted RBP11.11□□□□□ -0.63
YBX3-218ENST00000546298 LNPKQ9C0E8 428 aa11.11□□□□□ -0.63
YBX3-218ENST00000546298 RBM27Q9P2N5 1060 aaKnown RBP11.11□□□□□ -0.63
YBX3-218ENST00000546298 ZNF214Q9UL59 606 aaPredicted RBP11.11□□□□□ -0.63
YBX3-218ENST00000546298 MGAMO43451 1857 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 NAV1Q8NEY1 1877 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 TSPY2A6NKD2 308 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 TRIM6-TRIM34B2RNG4 842 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 ATP2A1O14983 1001 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 BMP3P12645 472 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 OAZ1P54368 228 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 MFAP1P55081 439 aaKnown RBP11.1□□□□□ -0.63
YBX3-218ENST00000546298 FAM47AQ5JRC9 791 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 SNRNP48Q6IEG0 339 aaKnown RBP11.1□□□□□ -0.63
YBX3-218ENST00000546298 CCDC129Q6ZRS4 1044 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 TRPV1Q8NER1 839 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 CHURC1Q8WUH1 139 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 KIFC2Q96AC6 838 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 DDX11Q96FC9 970 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 FBXO40Q9UH90 709 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 ANAPC4Q9UJX5 808 aa11.1□□□□□ -0.63
YBX3-218ENST00000546298 ISY1Q9ULR0 285 aaKnown RBP11.1□□□□□ -0.63
YBX3-218ENST00000546298 ZMYND8Q9ULU4 1186 aaPredicted RBP11.1□□□□□ -0.63
YBX3-218ENST00000546298 DOCK3Q8IZD9 2030 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 PLIN4Q96Q06 1357 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 DNM1LO00429 736 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 ORC4O43929 436 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 SLC1A4P43007 532 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 ZNF792Q3KQV3 632 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 B4GALNT3Q6L9W6 998 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 FAM160B2Q86V87 743 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 CHD1LQ86WJ1 897 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 CPXCR1Q8N123 301 aa11.09□□□□□ -0.63
YBX3-218ENST00000546298 LRRC47Q8N1G4 583 aaKnown RBP11.09□□□□□ -0.63
YBX3-218ENST00000546298 MSL3Q8N5Y2 521 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms