RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TBX22Q9Y458 520 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 A0A087X0B3 334 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 TDO2P48775 406 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 DNA2P51530 1060 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 CABP4P57796 275 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 SPA17Q15506 151 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 TCP11X2Q5H9J9 407 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 STRN4Q9NRL3 753 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 ZSWIM5Q9P217 1185 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 H7C1W4 665 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 AGPSO00116 658 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 CYP27A1Q02318 531 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 PPARAQ07869 468 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 MFSD6Q6ZSS7 791 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 AMOTL1Q8IY63 956 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 IGDCC4Q8TDY8 1250 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 EEF2KMTQ96G04 330 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 SHOX2O60902 331 aaPredicted RBP14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 A1BGP04217 495 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 SH2D3CQ8N5H7 860 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 TRIM47Q96LD4 638 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 ORAI2Q96SN7 254 aa14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 REXO2Q9Y3B8 237 aaKnown RBP14.38□□□□□ -0.11
SFSWAP-209ENST00000540469 ZNF532Q9HCE3 1301 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 CASP7P55210 303 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 GPIHBP1Q8IV16 184 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 UBAC1Q9BSL1 405 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 FAM217BQ9NTX9 383 aaPredicted RBP14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 LIMA1Q9UHB6 759 aaKnown RBP14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 SUFUQ9UMX1 484 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 NF2P35240 595 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 DPYDQ12882 1025 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 KCNV1Q6PIU1 500 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 CEP57Q86XR8 500 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 NOC3LQ8WTT2 800 aaKnown RBP14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 AATFQ9NY61 560 aaKnown RBP eCLIP14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 MAP3K15Q6ZN16 1313 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 PAFAH1B1P43034 410 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 EZH2Q15910 746 aaKnown RBP14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 CNNM1Q9NRU3 951 aa14.37□□□□□ -0.11
SFSWAP-209ENST00000540469 STK36Q9NRP7 1315 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 SSBP05455 408 aaKnown RBP eCLIP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 IFIT5Q13325 482 aaKnown RBP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 SPATA20Q8TB22 786 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 LRRC1Q9BTT6 524 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 PDE2AO00408 941 aaPredicted RBP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 USO1O60763 962 aaKnown RBP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 TACC1O75410 805 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 CXCR5P32302 372 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 HERVK_113P62684 666 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 CFAP58Q5T655 872 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 IFT81Q8WYA0 676 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 ARL8AQ96BM9 186 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 GDAQ9Y2T3 454 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 PRDM1O75626 825 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 PARP1P09874 1014 aaKnown RBP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 ADD2P35612 726 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 ATP2B2Q01814 1243 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 PAPD7Q5XG87 772 aaKnown RBP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 HDAC7Q8WUI4 952 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 CCDC42Q96M95 316 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 DMGDHQ9UI17 866 aaKnown RBP14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 RWDD2AQ9UIY3 292 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 DUSP10Q9Y6W6 482 aa14.36□□□□□ -0.11
SFSWAP-209ENST00000540469 ZNF335Q9H4Z2 1342 aaPredicted RBP14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 TRIM49BA6NDI0 452 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 CIAO1O76071 339 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 KRT2P35908 639 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 PDE6BP35913 854 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 C8orf74Q6P047 294 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 SGMS1Q86VZ5 419 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 IFNL2Q8IZJ0 200 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 LACRTQ9GZZ8 138 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 CD248Q9HCU0 757 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 LIFRP42702 1097 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 VAV2P52735 878 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 NNTQ13423 1086 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 LDHAL6AQ6ZMR3 332 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 KRT23Q9C075 422 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 MEFVO15553 781 aaPredicted RBP14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 MCAMP43121 646 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 EPHB4P54760 987 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 SMCR8Q8TEV9 937 aaPredicted RBP14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 FERMT2Q96AC1 680 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 CNNM2Q9H8M5 875 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 RMND1Q9NWS8 449 aa14.35□□□□□ -0.11
SFSWAP-209ENST00000540469 IFT88Q13099 833 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 MAATS1Q7Z4T9 603 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 CRACR2BQ8N4Y2 399 aaPredicted RBP14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 MB21D1Q8N884 522 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 ZNF526Q8TF50 670 aaPredicted RBP14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 AXIN2Q9Y2T1 843 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 ZC3H4Q9UPT8 1303 aaKnown RBP14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 ATP2C2O75185 946 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 MBD4O95243 580 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 KRT14P02533 472 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 HPDP32754 393 aaPredicted RBP14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 CCDC114Q96M63 670 aa14.34□□□□□ -0.11
SFSWAP-209ENST00000540469 SMARCAL1Q9NZC9 954 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms