RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TMEM265A0A087WTH1 108 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 SEPT4O43236 478 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 HSP90AA1P07900 732 aaKnown RBP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 XRCC6P12956 609 aaKnown RBP eCLIP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 POLA2Q14181 598 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 TRIM60Q495X7 471 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 C1orf53Q5VUE5 145 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 BADQ92934 168 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 PRDM6Q9NQX0 595 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 PRDM5Q9NQX1 630 aaPredicted RBP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 PDLIM7Q9NR12 457 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 MX1P20591 662 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 ADORA2AP29274 412 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 RABEP1Q15276 862 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 MYLIPQ8WY64 445 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 SYMPKQ92797 1274 aaKnown RBP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 MOV10L1Q9BXT6 1211 aaKnown RBP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 TTYH1Q9H313 450 aaPredicted RBP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 SLC5A4Q9NY91 659 aa9.78□□□□□ -0.84
NEDD8-207ENST00000533242 CIZ1Q9ULV3 898 aaPredicted RBP9.78□□□□□ -0.84
NEDD8-207ENST00000533242 COL11A1P12107 1806 aaPredicted RBP9.77□□□□□ -0.84
NEDD8-207ENST00000533242 GUCY1A2P33402 732 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 SHMT1P34896 483 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 OS9Q13438 667 aaPredicted RBP9.77□□□□□ -0.85
NEDD8-207ENST00000533242 COG2Q14746 738 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 CHAMP1Q96JM3 812 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 HOXC10Q9NYD6 342 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 ERC2O15083 957 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 FOSL2P15408 326 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 ADCYAP1R1P41586 468 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 LRRC41Q15345 812 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 ABRAQ8N0Z2 381 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 MB21D1Q8N884 522 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 SSH3Q8TE77 659 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 SPATC1LQ9H0A9 340 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 PHF24Q9UPV7 400 aa9.77□□□□□ -0.85
NEDD8-207ENST00000533242 TRIM43BA6NCK2 446 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 COBLO75128 1261 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 IDH1O75874 414 aaKnown RBP9.76□□□□□ -0.85
NEDD8-207ENST00000533242 SH3RF1Q7Z6J0 888 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 MAGEB6Q8N7X4 407 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 MIGA1Q8NAN2 632 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 TRIM43Q96BQ3 446 aaPredicted RBP9.76□□□□□ -0.85
NEDD8-207ENST00000533242 MROH8Q9H579 483 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 NRBP1Q9UHY1 535 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 DDX11L8A8MPP1 907 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 ERCC3P19447 782 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 SEPT2Q15019 361 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 ANO1Q5XXA6 986 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 GAS2L3Q86XJ1 694 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 RILPL2Q969X0 211 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 ESYT1Q9BSJ8 1104 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 DBNLQ9UJU6 430 aaKnown RBP9.76□□□□□ -0.85
NEDD8-207ENST00000533242 TACC3Q9Y6A5 838 aa9.76□□□□□ -0.85
NEDD8-207ENST00000533242 SMCHD1A6NHR9 2005 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 COL6A3P12111 3177 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 SURF6O75683 361 aaKnown RBP9.75□□□□□ -0.85
NEDD8-207ENST00000533242 CHMLP26374 656 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 DSG3P32926 999 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 TLE2Q04725 743 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 GABPAQ06546 454 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 MAP3K12Q12852 859 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 TANGO6Q9C0B7 1094 aa9.75□□□□□ -0.85
NEDD8-207ENST00000533242 TRIM6-TRIM34B2RNG4 842 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 KIAA0355O15063 1070 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 REC8O95072 547 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 POLR3DP05423 398 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-207ENST00000533242 CLTBP09497 229 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 PLCD1P51178 756 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 PRAMEF19Q5SWL8 479 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 FERMT2Q96AC1 680 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 MAML3Q96JK9 1138 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 RNPC3Q96LT9 517 aaKnown RBP9.74□□□□□ -0.85
NEDD8-207ENST00000533242 ZDHHC9Q9Y397 364 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 ROBO3Q96MS0 1386 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 A0A1W2PRG0 241 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 GOLGA6L3A6NEY3 463 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 MYCNP04198 464 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-207ENST00000533242 FAM47AQ5JRC9 791 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 CASC1Q6TDU7 716 aa9.74□□□□□ -0.85
NEDD8-207ENST00000533242 RIOK1Q9BRS2 568 aaKnown RBP9.74□□□□□ -0.85
NEDD8-207ENST00000533242 CCDC8Q9H0W5 538 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-207ENST00000533242 TLR7Q9NYK1 1049 aaKnown RBP9.74□□□□□ -0.85
NEDD8-207ENST00000533242 BAG4O95429 457 aaKnown RBP9.73□□□□□ -0.85
NEDD8-207ENST00000533242 SLC25A27O95847 323 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 FCER1AP12319 257 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 NCAPG2Q86XI2 1143 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 PI4K2BQ8TCG2 481 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 XPNPEP3Q9NQH7 507 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 MAGEB6P1A0A0J9YX57 407 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 MPHOSPH10O00566 681 aaKnown RBP9.73□□□□□ -0.85
NEDD8-207ENST00000533242 RARBP10826 455 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 ITGB8P26012 769 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 EPHB4P54760 987 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 FPGSQ05932 587 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 PLS1Q14651 629 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 TJAP1Q5JTD0 557 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 TMEM179Q6ZVK1 233 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 RNF180Q86T96 592 aa9.73□□□□□ -0.85
NEDD8-207ENST00000533242 RHPN1Q8TCX5 695 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms