RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 MICAL1Q8TDZ2 1067 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 TRIT1Q9H3H1 467 aaKnown RBP6.87□□□□□ -1.31
CD44-215ENST00000525241 PAK6Q9NQU5 681 aaPredicted RBP6.87□□□□□ -1.31
CD44-215ENST00000525241 GPATCH2Q9NW75 528 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 CBFA2T2O43439 604 aa6.86□□□□□ -1.31
CD44-215ENST00000525241 TPP2P29144 1249 aaPredicted RBP6.86□□□□□ -1.31
CD44-215ENST00000525241 LARP1BQ659C4 914 aaKnown RBP6.86□□□□□ -1.31
CD44-215ENST00000525241 KIAA1211LQ6NV74 962 aa6.86□□□□□ -1.31
CD44-215ENST00000525241 ENOX1Q8TC92 643 aaKnown RBP6.86□□□□□ -1.31
CD44-215ENST00000525241 HAUS7Q99871 368 aa6.86□□□□□ -1.31
CD44-215ENST00000525241 HDAC8Q9BY41 377 aa6.86□□□□□ -1.31
CD44-215ENST00000525241 FBXL21Q9UKT6 434 aa6.86□□□□□ -1.31
CD44-215ENST00000525241 ANGEL1Q9UNK9 670 aaKnown RBP6.86□□□□□ -1.31
CD44-215ENST00000525241 PCDHB12Q9Y5F1 795 aa6.86□□□□□ -1.31
CD44-215ENST00000525241 SIGLEC6O43699 453 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 PRAMEF1O95521 474 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 ESR1P03372 595 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 CD247P20963 164 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 RAB33AQ14088 237 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 FXNQ16595 210 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 C6orf15Q6UXA7 325 aaPredicted RBP6.85□□□□□ -1.31
CD44-215ENST00000525241 CKAP2LQ8IYA6 745 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 CELF2-AS1Q8N7Q2 184 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 FLCNQ8NFG4 579 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 SYTL5Q8TDW5 730 aaPredicted RBP6.85□□□□□ -1.31
CD44-215ENST00000525241 KLHL25Q9H0H3 589 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 ASCC2Q9H1I8 757 aaPredicted RBP6.85□□□□□ -1.31
CD44-215ENST00000525241 GP6Q9HCN6 339 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 GFOD1Q9NXC2 390 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 PRR13Q9NZ81 148 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 SUSD2Q9UGT4 822 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 MINPP1Q9UNW1 487 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 ZNF451Q9Y4E5 1061 aa6.85□□□□□ -1.31
CD44-215ENST00000525241 B2RBV5 119 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 IKZF1Q13422 519 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 NCAPHQ15003 741 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 CLEC16AQ2KHT3 1053 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 TMPRSS7Q7RTY8 843 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 FAM178BQ8IXR5 827 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 Q8N3U1 123 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 DAGLBQ8NCG7 672 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 DRC1Q96MC2 740 aa6.84□□□□□ -1.31
CD44-215ENST00000525241 HIRIP3Q9BW71 556 aaPredicted RBP6.84□□□□□ -1.31
CD44-215ENST00000525241 PPP1R1BQ9UD71 204 aaPredicted RBP6.84□□□□□ -1.31
CD44-215ENST00000525241 R3HCC1Q9Y3T6 440 aaKnown RBP6.84□□□□□ -1.31
CD44-215ENST00000525241 DDAH1O94760 285 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 EPHX1P07099 455 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 FUT4P22083 530 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 RANGAP1P46060 587 aaPredicted RBP6.83□□□□□ -1.32
CD44-215ENST00000525241 ZNF445P59923 1031 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 ANGEL2Q5VTE6 544 aaKnown RBP6.83□□□□□ -1.32
CD44-215ENST00000525241 MRM1Q6IN84 353 aaKnown RBP6.83□□□□□ -1.32
CD44-215ENST00000525241 TCTN2Q96GX1 697 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 ST7Q9NRC1 585 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 CHST7Q9NS84 486 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 LMCD1Q9NZU5 365 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 DUSP13Q9UII6 198 aa6.83□□□□□ -1.32
CD44-215ENST00000525241 GJB6O95452 261 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 CTSKP43235 329 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 ZP2Q05996 745 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 TCEAL1Q15170 157 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 DDR2Q16832 855 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 NBPF6Q5VWK0 638 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 HEATR6Q6AI08 1181 aaKnown RBP6.82□□□□□ -1.32
CD44-215ENST00000525241 CREG2Q8IUH2 290 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 TP53INP2Q8IXH6 220 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 USHBP1Q8N6Y0 703 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 ZNF655Q8N720 491 aaPredicted RBP6.82□□□□□ -1.32
CD44-215ENST00000525241 ZNF513Q8N8E2 541 aaPredicted RBP6.82□□□□□ -1.32
CD44-215ENST00000525241 BRF1Q92994 677 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 NBPF4Q96M43 638 aa6.82□□□□□ -1.32
CD44-215ENST00000525241 CARS2Q9HA77 564 aaKnown RBP6.82□□□□□ -1.32
CD44-215ENST00000525241 A0A087WZG4 1122 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 ANKRD34BA5PLL1 514 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 ITGA4P13612 1032 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 GP2P55259 537 aaKnown RBP6.81□□□□□ -1.32
CD44-215ENST00000525241 NOL9Q5SY16 702 aaKnown RBP6.81□□□□□ -1.32
CD44-215ENST00000525241 FGD4Q96M96 766 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 TRIM55Q9BYV6 548 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 WHRNQ9P202 907 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 PCDHA11Q9Y5I1 949 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 FHOD1Q9Y613 1164 aa6.81□□□□□ -1.32
CD44-215ENST00000525241 MEIS1O00470 390 aa6.8□□□□□ -1.32
CD44-215ENST00000525241 ZNF143P52747 638 aaPredicted RBP6.8□□□□□ -1.32
CD44-215ENST00000525241 SERINC3Q13530 473 aa6.8□□□□□ -1.32
CD44-215ENST00000525241 AGBL5Q8NDL9 886 aa6.8□□□□□ -1.32
CD44-215ENST00000525241 DNAJC2Q99543 621 aaKnown RBP6.8□□□□□ -1.32
CD44-215ENST00000525241 PRDM7Q9NQW5 492 aa6.8□□□□□ -1.32
CD44-215ENST00000525241 APEX2Q9UBZ4 518 aa6.8□□□□□ -1.32
CD44-215ENST00000525241 ADAMTS6Q9UKP5 1117 aa6.8□□□□□ -1.32
CD44-215ENST00000525241 LTKP29376 864 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 EGR3Q06889 387 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 PLCL1Q15111 1095 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 SLC23A3Q6PIS1 610 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 ADAT2Q7Z6V5 191 aaKnown RBP6.79□□□□□ -1.32
CD44-215ENST00000525241 ABI1Q8IZP0 508 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 FIBCD1Q8N539 461 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 LINC00116Q8NCU8 138 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 ADCY4Q8NFM4 1077 aa6.79□□□□□ -1.32
CD44-215ENST00000525241 UBXN4Q92575 508 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms