RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 RAD21O60216 631 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 GJB1P08034 283 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 PTPREP23469 700 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 TRIB2Q92519 343 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 NBPF3Q9H094 633 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 RNF208Q9H0X6 261 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 IL17RBQ9NRM6 502 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 PPP1R9AQ9ULJ8 1098 aa13.78□□□□□ -0.2
SH3RF1-205ENST00000511421 MKI67P46013 3256 aaKnown RBP13.77□□□□□ -0.2
SH3RF1-205ENST00000511421 TSPY2A6NKD2 308 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 HMGCRP04035 888 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 NOVP48745 357 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 HAND2P61296 217 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 TRIM32Q13049 653 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 LRRC47Q8N1G4 583 aaKnown RBP13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 GMCL1P1Q8NEA9 526 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 SHCBP1Q8NEM2 672 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 SHISA4Q96DD7 197 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 IL25Q9H293 177 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 A0A0G2JMZ2 1700 aa13.77□□□□□ -0.21
SH3RF1-205ENST00000511421 SLC15A5A6NIM6 579 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 VWA5AO00534 786 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 RANBP6O60518 1105 aaKnown RBP13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 NMT2O60551 498 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 RGS2P41220 211 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 GJA8P48165 433 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 MAP2K5Q13163 448 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 GRB14Q14449 540 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 TMEM132BQ14DG7 1078 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 WDR78Q5VTH9 848 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 SAMD1Q6SPF0 538 aaPredicted RBP13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 TBC1D10CQ8IV04 446 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 REPS2Q8NFH8 660 aa13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 PAK6Q9NQU5 681 aaPredicted RBP13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 TNRC18O15417 2968 aaPredicted RBP13.76□□□□□ -0.21
SH3RF1-205ENST00000511421 ERCC3P19447 782 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 CCL14Q16627 93 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 NKX2-3Q8TAU0 364 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 STAG1Q8WVM7 1258 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 APBA2Q99767 749 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 SLF1Q9BQI6 1058 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 DSCC1Q9BVC3 393 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 CWC22Q9HCG8 908 aaKnown RBP13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 PARP14Q460N5 1801 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 HOXC6P09630 235 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 PLS1Q14651 629 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 PPP4R3BQ5MIZ7 849 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 AKNAD1Q5T1N1 836 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 MAP3K21Q5TCX8 1036 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 SLFN13Q68D06 897 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 TRMT44Q8IYL2 757 aaKnown RBP13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 U2AF1L4Q8WU68 220 aaKnown RBP13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 ZNF214Q9UL59 606 aaPredicted RBP13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 IVNS1ABPQ9Y6Y0 642 aa13.75□□□□□ -0.21
SH3RF1-205ENST00000511421 MYH4Q9Y623 1939 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 STRNO43815 780 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 SGPL1O95470 568 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 PCP11498 1178 aaKnown RBP13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 CHMLP26374 656 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 RRP12Q5JTH9 1297 aaKnown RBP13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 NCAPG2Q86XI2 1143 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 RIOX2Q8IUF8 465 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 PRPF38AQ8NAV1 312 aaKnown RBP13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 MROH8Q9H579 483 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 TOMM22Q9NS69 142 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 TCP11L1Q9NUJ3 509 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 STX8Q9UNK0 236 aa13.74□□□□□ -0.21
SH3RF1-205ENST00000511421 RPTORQ8N122 1335 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 ZNF213O14771 459 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 SLC25A27O95847 323 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 IGHA2P01877 340 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 BMP3P12645 472 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 ZKSCAN1P17029 563 aaPredicted RBP13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 STAT3P40763 770 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 MFSD6Q6ZSS7 791 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 UBE2Q1Q7Z7E8 422 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 NPLOC4Q8TAT6 608 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 GMCL1Q96IK5 515 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 DEFB118Q96PH6 123 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 FLRT1Q9NZU1 646 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 FEM1BQ9UK73 627 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 NEDD4P46934 1319 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 RAD50Q92878 1312 aa13.73□□□□□ -0.21
SH3RF1-205ENST00000511421 PRKAR2AP13861 404 aaKnown RBP13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 MCCP23508 829 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 ADORA2AP29274 412 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 CACNB2Q08289 660 aaPredicted RBP13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 CENPQQ7L2Z9 268 aaPredicted RBP13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 ABRAQ8N0Z2 381 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 CRISPLD2Q9H0B8 497 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 RNF41Q9H4P4 317 aaPredicted RBP13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 HMX1Q9NP08 348 aaPredicted RBP13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 ATP2A1O14983 1001 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 COBLO75128 1261 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 RASGRP2Q7LDG7 609 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 KIFC2Q96AC6 838 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 TMEM47Q9BQJ4 181 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 SLC38A10Q9HBR0 1119 aa13.72□□□□□ -0.21
SH3RF1-205ENST00000511421 TMEM232C9JQI7 657 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms