RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	BMP8B	P34820	402 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	IREB2	P48200	963 aa	Known RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	CCL15	Q16663	113 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	LRIT3	Q3SXY7	679 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	C1orf53	Q5VUE5	145 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	KANK3	Q6NY19	840 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	KIAA0825	Q8IV33	1275 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	ANKMY2	Q8IV38	441 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	ANKRD13A	Q8IZ07	590 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	FAM43A	Q8N2R8	423 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	PNISR	Q8TF01	805 aa	Known RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	XAGE3	Q8WTP9	111 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	U2AF1L4	Q8WU68	220 aa	Known RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	SCG3	Q8WXD2	468 aa	Known RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	BRI3BP	Q8WY22	251 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	GDF15	Q99988	308 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	VRTN	Q9H8Y1	702 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	SEC31B	Q9NQW1	1179 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	BIN2	Q9UBW5	565 aa	Predicted RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	RBM19	Q9Y4C8	960 aa	Known RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	GPC6	Q9Y625	555 aa	Predicted RBP	6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	SSC5D	A1L4H1	1573 aa		6.99	□□□□□ -1.29
PTPN4-210	ENST00000485247	UNCX	A6NJT0	531 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	TLR2	O60603	784 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	USP2	O75604	605 aa	Predicted RBP	6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	U2AF1L5	P0DN76	240 aa	Predicted RBP	6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	EPX	P11678	715 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	GRK4	P32298	578 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	PRMT2	P55345	433 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	U2AF1	Q01081	240 aa	Known RBP eCLIP	6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	SUPT20HL1	Q3ZLR7	823 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	NBPF12	Q5TAG4	269 aa	Predicted RBP	6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	FCHSD1	Q86WN1	690 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	STAG2	Q8N3U4	1231 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	ZNF280C	Q8ND82	737 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	RAET1E	Q8TD07	263 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	FAM161B	Q96MY7	647 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	MARK1	Q9P0L2	795 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	RIPOR2	Q9Y4F9	1068 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	MYO3B	Q8WXR4	1341 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	IRS2	Q9Y4H2	1338 aa		6.98	□□□□□ -1.29
PTPN4-210	ENST00000485247	LAMB1	P07942	1786 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	ZNF646	O15015	1829 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	PSME4	Q14997	1843 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	CLRN2	A0PK11	232 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	WDHD1	O75717	1129 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	SGPL1	O95470	568 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	TFRC	P02786	760 aa	Known RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	HSPA5	P11021	654 aa	Known RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	SYN1	P17600	705 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	CTGF	P29279	349 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	PLA2G5	P39877	138 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	PSMC4	P43686	418 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	GTF2A2	P52657	109 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	UBXN2A	P68543	259 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	SFSWAP	Q12872	951 aa	Known RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	LAMC2	Q13753	1193 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	ZNF468	Q5VIY5	522 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	STRIP1	Q5VSL9	837 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	C7orf61	Q8IZ16	206 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	ALDH16A1	Q8IZ83	802 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	TDH	Q8IZJ6	230 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	BEND7	Q8N7W2	519 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	FAM122A	Q96E09	287 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	ZBED3	Q96IU2	234 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	GUCD1	Q96NT3	240 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	SRRD	Q9UH36	339 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	CHMP3	Q9Y3E7	222 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	COL1A1	P02452	1464 aa	Predicted RBP	6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	XDH	P47989	1333 aa		6.97	□□□□□ -1.29
PTPN4-210	ENST00000485247	PHF20L1	A8MW92	1017 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	IRS4	O14654	1257 aa	Predicted RBP	6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	ATP2B4	P23634	1241 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	ADH6	P28332	368 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	HOXD10	P28358	340 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	MAGEA10	P43363	369 aa	Predicted RBP	6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	PCBP4	P57723	403 aa	Known RBP	6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	DLGAP5	Q15398	846 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	TTLL5	Q6EMB2	1281 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	PAWR	Q96IZ0	340 aa	Known RBP	6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	SUSD3	Q96L08	255 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	SLC30A3	Q99726	388 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	HINFP	Q9BQA5	517 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	UBE2O	Q9C0C9	1292 aa	Known RBP	6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	VEZT	Q9HBM0	779 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	AVEN	Q9NQS1	362 aa	Predicted RBP	6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	PCDHAC2	Q9Y5I4	1007 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	PPP2R3B	Q9Y5P8	575 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	VCAN	P13611	3396 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	MYPN	Q86TC9	1320 aa		6.96	□□□□□ -1.3
PTPN4-210	ENST00000485247	BTBD19	C9JJ37	291 aa		6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	MYO1B	O43795	1136 aa		6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	ITGB2	P05107	769 aa		6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	RFX1	P22670	979 aa		6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	MMP14	P50281	582 aa		6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	TYRO3	Q06418	890 aa		6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	6.95	□□□□□ -1.3
PTPN4-210	ENST00000485247	BTBD6	Q96KE9	485 aa		6.95	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms