RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	MKL1	Q969V6	931 aa		28.45	■■■□□ 2.14
CPNE1-223	ENST00000475146	SPATC1L	Q9H0A9	340 aa		28.45	■■■□□ 2.14
CPNE1-223	ENST00000475146	SYNPO2	Q9UMS6	1093 aa		28.45	■■■□□ 2.14
CPNE1-223	ENST00000475146	PLXNB2	O15031	1838 aa		28.44	■■■□□ 2.14
CPNE1-223	ENST00000475146	CENPQ	Q7L2Z9	268 aa	Predicted RBP	28.44	■■■□□ 2.14
CPNE1-223	ENST00000475146	MOV10L1	Q9BXT6	1211 aa	Known RBP	28.44	■■■□□ 2.14
CPNE1-223	ENST00000475146	STX8	Q9UNK0	236 aa		28.44	■■■□□ 2.14
CPNE1-223	ENST00000475146	IVNS1ABP	Q9Y6Y0	642 aa		28.44	■■■□□ 2.14
CPNE1-223	ENST00000475146	FGR	P09769	529 aa		28.43	■■■□□ 2.14
CPNE1-223	ENST00000475146	RNF208	Q9H0X6	261 aa		28.43	■■■□□ 2.14
CPNE1-223	ENST00000475146	PPP1R9A	Q9ULJ8	1098 aa		28.43	■■■□□ 2.14
CPNE1-223	ENST00000475146	PARP14	Q460N5	1801 aa		28.43	■■■□□ 2.14
CPNE1-223	ENST00000475146	NMT2	O60551	498 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	HMGCR	P04035	888 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	RGS2	P41220	211 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	MORN1	Q5T089	497 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	MFSD6	Q6ZSS7	791 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	TBC1D10C	Q8IV04	446 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	GMCL1P1	Q8NEA9	526 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	DSCC1	Q9BVC3	393 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	UNC93B1	Q9H1C4	597 aa		28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	ISY1	Q9ULR0	285 aa	Known RBP	28.42	■■■□□ 2.14
CPNE1-223	ENST00000475146	ZNF213	O14771	459 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	AKNAD1	Q5T1N1	836 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	SLFN13	Q68D06	897 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	STAG1	Q8WVM7	1258 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	RUFY2	Q8WXA3	655 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	SLF1	Q9BQI6	1058 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	NBPF3	Q9H094	633 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	IL25	Q9H293	177 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	RNF41	Q9H4P4	317 aa	Predicted RBP	28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	IL17RB	Q9NRM6	502 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	RAD50	Q92878	1312 aa		28.41	■■■□□ 2.14
CPNE1-223	ENST00000475146	PC	P11498	1178 aa	Known RBP	28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	XRCC5	P13010	732 aa	Known RBP	28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	ERCC3	P19447	782 aa		28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	PTPRE	P23469	700 aa		28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	MAP2K5	Q13163	448 aa		28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	SHCBP1	Q8NEM2	672 aa		28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	TRIB2	Q92519	343 aa		28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	APBA2	Q99767	749 aa		28.4	■■■□□ 2.14
CPNE1-223	ENST00000475146	SLC15A5	A6NIM6	579 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	VWA5A	O00534	786 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	ZKSCAN1	P17029	563 aa	Predicted RBP	28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	CHML	P26374	656 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	TMEM132B	Q14DG7	1078 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	NCAPG2	Q86XI2	1143 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	USP6NL	Q92738	828 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	ADAMTS5	Q9UNA0	930 aa		28.39	■■■□□ 2.14
CPNE1-223	ENST00000475146	GJB1	P08034	283 aa		28.38	■■■□□ 2.13
CPNE1-223	ENST00000475146	CHMP4C	Q96CF2	233 aa		28.38	■■■□□ 2.13
CPNE1-223	ENST00000475146	CTNNA3	Q9UI47	895 aa		28.38	■■■□□ 2.13
CPNE1-223	ENST00000475146	LAMA4	Q16363	1823 aa		28.38	■■■□□ 2.13
CPNE1-223	ENST00000475146	CENPF	P49454	3210 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	BMP3	P12645	472 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	TRIM32	Q13049	653 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	GRB14	Q14449	540 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	IMMT	Q16891	758 aa	Known RBP	28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	TRMT44	Q8IYL2	757 aa	Known RBP	28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	NKX2-3	Q8TAU0	364 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	KIFC2	Q96AC6	838 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	MROH8	Q9H579	483 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	FEM1B	Q9UK73	627 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	MTMR7	Q9Y216	660 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	NEDD4	P46934	1319 aa		28.37	■■■□□ 2.13
CPNE1-223	ENST00000475146	COL11A1	P12107	1806 aa	Predicted RBP	28.36	■■■□□ 2.13
CPNE1-223	ENST00000475146	NEFL	P07196	543 aa		28.36	■■■□□ 2.13
CPNE1-223	ENST00000475146	SLC1A4	P43007	532 aa		28.36	■■■□□ 2.13
CPNE1-223	ENST00000475146	PRPF38A	Q8NAV1	312 aa	Known RBP	28.36	■■■□□ 2.13
CPNE1-223	ENST00000475146	CTDP1	Q9Y5B0	961 aa	Predicted RBP	28.36	■■■□□ 2.13
CPNE1-223	ENST00000475146	SLC25A27	O95847	323 aa		28.35	■■■□□ 2.13
CPNE1-223	ENST00000475146	CCL14	Q16627	93 aa		28.35	■■■□□ 2.13
CPNE1-223	ENST00000475146	ESR2	Q92731	530 aa		28.35	■■■□□ 2.13
CPNE1-223	ENST00000475146	GMCL1	Q96IK5	515 aa		28.35	■■■□□ 2.13
CPNE1-223	ENST00000475146	MCC	P23508	829 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	STAT3	P40763	770 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	GJA8	P48165	433 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	IK	Q13123	557 aa	Predicted RBP	28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	SKAP1	Q86WV1	359 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	RIOX2	Q8IUF8	465 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	REPS2	Q8NFH8	660 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	U2AF1L4	Q8WU68	220 aa	Known RBP	28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	SHISA4	Q96DD7	197 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	CCDC136	Q96JN2	1154 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	28.34	■■■□□ 2.13	1e-8	■■□□□ 12.8
CPNE1-223	ENST00000475146	TCP11L1	Q9NUJ3	509 aa		28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	ZNF214	Q9UL59	606 aa	Predicted RBP	28.34	■■■□□ 2.13
CPNE1-223	ENST00000475146	TMEM232	C9JQI7	657 aa		28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	STRN	O43815	780 aa		28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	PRKAR2A	P13861	404 aa	Known RBP	28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	ADORA2A	P29274	412 aa		28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	DPP9	Q86TI2	863 aa		28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	DEFB118	Q96PH6	123 aa		28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	HMX1	Q9NP08	348 aa	Predicted RBP	28.33	■■■□□ 2.13
CPNE1-223	ENST00000475146	ZBED4	O75132	1171 aa		28.32	■■■□□ 2.12
CPNE1-223	ENST00000475146	TOP1	P11387	765 aa	Known RBP	28.32	■■■□□ 2.12
CPNE1-223	ENST00000475146	NOV	P48745	357 aa		28.32	■■■□□ 2.12
CPNE1-223	ENST00000475146	STAT2	P52630	851 aa		28.32	■■■□□ 2.12
CPNE1-223	ENST00000475146	TEX13B	Q9BXU2	312 aa		28.32	■■■□□ 2.12
CPNE1-223	ENST00000475146	PAK6	Q9NQU5	681 aa	Predicted RBP	28.32	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 229.9 ms