RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MRFAP1Q9Y605 127 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 UNCXA6NJT0 531 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 POLR3GO15318 223 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-205ENST00000469550 STX10O60499 249 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 SASH3O75995 380 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 SERPINC1P01008 464 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 HSPD1P10809 573 aaKnown RBP10.93□□□□□ -0.66
HDAC3-205ENST00000469550 CASQ1P31415 396 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 TUBB4BP68371 445 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 GTF2IP78347 998 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 GUCY1B3Q02153 619 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 TBX2Q13207 712 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-205ENST00000469550 IFIT5Q13325 482 aaKnown RBP10.93□□□□□ -0.66
HDAC3-205ENST00000469550 SLC39A14Q15043 492 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 IQUBQ8NA54 791 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 SMARCE1Q969G3 411 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 FUT8Q9BYC5 575 aa10.93□□□□□ -0.66
HDAC3-205ENST00000469550 CWC15Q9P013 229 aaKnown RBP10.93□□□□□ -0.66
HDAC3-205ENST00000469550 CCDC151A5D8V7 595 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 PPP6R2O75170 966 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 ATP1A3P13637 1013 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 BRD3Q15059 726 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 PKN2Q16513 984 aaKnown RBP10.92□□□□□ -0.66
HDAC3-205ENST00000469550 ARMC9Q7Z3E5 817 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 KIAA0825Q8IV33 1275 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 CERS5Q8N5B7 392 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 GOLGA5Q8TBA6 731 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 HNRNPLLQ8WVV9 542 aaKnown RBP10.92□□□□□ -0.66
HDAC3-205ENST00000469550 SSC5DA1L4H1 1573 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 BIN1O00499 593 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 SEC31AO94979 1220 aaKnown RBP10.92□□□□□ -0.66
HDAC3-205ENST00000469550 SYKP43405 635 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 PPP2R3AQ06190 1150 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 SREBF2Q12772 1141 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 CFAP100Q494V2 611 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 PRAMEF18Q5VWM3 479 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 ZNF804AQ7Z570 1209 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 NEK11Q8NG66 645 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 GOLGA1Q92805 767 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 PAG1Q9NWQ8 432 aa10.92□□□□□ -0.66
HDAC3-205ENST00000469550 NAP1L2Q9ULW6 460 aaPredicted RBP10.92□□□□□ -0.66
HDAC3-205ENST00000469550 SCAF8Q9UPN6 1271 aaKnown RBP10.92□□□□□ -0.66
HDAC3-205ENST00000469550 WDR19Q8NEZ3 1342 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 MAP2K7O14733 419 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 CHGBP05060 677 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 TUBB2AQ13885 445 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 TTLL12Q14166 644 aaPredicted RBP10.91□□□□□ -0.66
HDAC3-205ENST00000469550 DLGAP5Q15398 846 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 ZSCAN26Q16670 478 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 KRBA2Q6ZNG9 492 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 BAG1Q99933 345 aaPredicted RBP10.91□□□□□ -0.66
HDAC3-205ENST00000469550 TUBB2BQ9BVA1 445 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 PARD6BQ9BYG5 372 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 EFCC1Q9HA90 598 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 FAM205AQ6ZU69 1335 aa10.91□□□□□ -0.66
HDAC3-205ENST00000469550 RNF113AO15541 343 aaKnown RBP10.9□□□□□ -0.66
HDAC3-205ENST00000469550 POLR3DP05423 398 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-205ENST00000469550 TXLNAP40222 546 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 GNG11P61952 73 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 SPRYD7Q5W111 196 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.9□□□□□ -0.66
HDAC3-205ENST00000469550 KIFC2Q96AC6 838 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 OTOFQ9HC10 1997 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 SPDYE2BA6NHP3 402 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 POTEB2H3BUK9 544 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 WDHD1O75717 1129 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-205ENST00000469550 SPDYE6P0CI01 402 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 LMBR1LQ6UX01 489 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 ZNF296Q8WUU4 475 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-205ENST00000469550 DEFB129Q9H1M3 183 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 RASSF4Q9H2L5 321 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.9□□□□□ -0.66
HDAC3-205ENST00000469550 NDUFB9Q9Y6M9 179 aa10.9□□□□□ -0.66
HDAC3-205ENST00000469550 MAST3O60307 1309 aa10.9□□□□□ -0.67
HDAC3-205ENST00000469550 GPR25O00155 361 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 SNAP23O00161 211 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 RPS6KA5O75582 802 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 ALDH1A1P00352 501 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 ZBTB48P10074 688 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-205ENST00000469550 USP5P45974 858 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 UBE4AQ14139 1066 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 CCDC57Q2TAC2 916 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 WDR24Q96S15 920 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 ZCCHC17Q9NP64 241 aaKnown RBP10.89□□□□□ -0.67
HDAC3-205ENST00000469550 ADAM21Q9UKJ8 722 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 HPS5Q9UPZ3 1129 aa10.89□□□□□ -0.67
HDAC3-205ENST00000469550 MANSC4A6NHS7 340 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-205ENST00000469550 VGLL3A8MV65 326 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 KIF28PB7ZC32 967 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 GOLIM4O00461 696 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 INHBEP58166 350 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 PDE4CQ08493 712 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 PTPAQ15257 358 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 LONRF2Q1L5Z9 754 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 RESP18Q5W5W9 173 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 SPECC1LQ69YQ0 1117 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 OTUD7BQ6GQQ9 843 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 SHC4Q6S5L8 630 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 TC2NQ8N9U0 490 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 HELBQ8NG08 1087 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms