RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SPOCK3Q9BQ16 436 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 UTP14AQ9BVJ6 771 aaKnown RBP6.76□□□□□ -1.33
VPS41-211ENST00000466017 NYXQ9GZU5 481 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 BICC1Q9H694 974 aaKnown RBP6.76□□□□□ -1.33
VPS41-211ENST00000466017 EFCC1Q9HA90 598 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 C11orf16Q9NQ32 467 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 NIP7Q9Y221 180 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS41-211ENST00000466017 UBN2Q6ZU65 1347 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 SH3TC1Q8TE82 1336 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 RTL9Q8NET4 1388 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 LILRB5O75023 590 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 RGS9O75916 674 aaPredicted RBP6.75□□□□□ -1.33
VPS41-211ENST00000466017 NTSR2O95665 410 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 NRLP54845 237 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 FKBP4Q02790 459 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS41-211ENST00000466017 PTPN12Q05209 780 aaKnown RBP6.75□□□□□ -1.33
VPS41-211ENST00000466017 SF3B2Q13435 895 aaKnown RBP6.75□□□□□ -1.33
VPS41-211ENST00000466017 SF3B3Q15393 1217 aaKnown RBP6.75□□□□□ -1.33
VPS41-211ENST00000466017 EPHA10Q5JZY3 1008 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 ANKRD45Q5TZF3 282 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 USPL1Q5W0Q7 1092 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 SHISA2Q6UWI4 295 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 TPTE2Q6XPS3 522 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 UBE3BQ7Z3V4 1068 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 NLGN1Q8N2Q7 840 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 OR13H1Q8NG92 308 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 SETDB2Q96T68 719 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 CHRDQ9H2X0 955 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 ELP3Q9H9T3 547 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 GPR108Q9NPR9 543 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 KANSL3Q9P2N6 904 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 TRMT112Q9UI30 125 aaKnown RBP6.75□□□□□ -1.33
VPS41-211ENST00000466017 TRIM33Q9UPN9 1127 aa6.75□□□□□ -1.33
VPS41-211ENST00000466017 ANKRD36CQ5JPF3 1778 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 TNS1Q9HBL0 1735 aaKnown RBP6.74□□□□□ -1.33
VPS41-211ENST00000466017 IRS4O14654 1257 aaPredicted RBP6.74□□□□□ -1.33
VPS41-211ENST00000466017 SURF6O75683 361 aaKnown RBP6.74□□□□□ -1.33
VPS41-211ENST00000466017 CIAO1O76071 339 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 GYS1P13807 737 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 EIF2AK2P19525 551 aaKnown RBP6.74□□□□□ -1.33
VPS41-211ENST00000466017 GPTP24298 496 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 G3BP1Q13283 466 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS41-211ENST00000466017 SLC15A2Q16348 729 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 C8orf34Q49A92 452 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 TBC1D9BQ66K14 1250 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 LMBR1LQ6UX01 489 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 TTLL11Q8NHH1 800 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 PLD4Q96BZ4 506 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 FAM89AQ96GI7 184 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 LRRCC1Q9C099 1032 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 FOXD3Q9UJU5 478 aaPredicted RBP6.74□□□□□ -1.33
VPS41-211ENST00000466017 UBR3Q6ZT12 1888 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 BCORQ6W2J9 1755 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 RIC1Q4ADV7 1423 aa6.74□□□□□ -1.33
VPS41-211ENST00000466017 A0A0A0MRY4 1105 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 ICMTO60725 284 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 DEAF1O75398 565 aaPredicted RBP6.73□□□□□ -1.33
VPS41-211ENST00000466017 PSAPP07602 524 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 SELPP16109 830 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 IL15P40933 162 aaPredicted RBP6.73□□□□□ -1.33
VPS41-211ENST00000466017 ARHGAP4P98171 946 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 EZH2Q15910 746 aaKnown RBP6.73□□□□□ -1.33
VPS41-211ENST00000466017 CCDC57Q2TAC2 916 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 ELMSAN1Q6PJG2 1045 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 AMIGO3Q86WK7 504 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 HHIPQ96QV1 700 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 STAP2Q9UGK3 403 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 SRP68Q9UHB9 627 aaKnown RBP6.73□□□□□ -1.33
VPS41-211ENST00000466017 AFDNP55196 1824 aaKnown RBP6.73□□□□□ -1.33
VPS41-211ENST00000466017 AOX1Q06278 1338 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 SALL3Q9BXA9 1300 aa6.73□□□□□ -1.33
VPS41-211ENST00000466017 ANKRD18BA2A2Z9 1011 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 KLRG2A4D1S0 409 aaPredicted RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 EYA2O00167 538 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 SASH1O94885 1247 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 HOXD8P13378 290 aaPredicted RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 MZF1P28698 734 aaPredicted RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 CTSWP56202 376 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 IFIT5Q13325 482 aaKnown RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 NFIXQ14938 502 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 ZNF827Q17R98 1081 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 CCDC152Q4G0S7 254 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 MSL1Q68DK7 614 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 GDF6Q6KF10 455 aaPredicted RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 TICAM2Q86XR7 235 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 COL23A1Q86Y22 540 aaPredicted RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 CLASRPQ8N2M8 674 aaKnown RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 RASSF4Q9H2L5 321 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 STK32BQ9NY57 414 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 ABI2Q9NYB9 513 aaPredicted RBP6.72□□□□□ -1.33
VPS41-211ENST00000466017 TFCP2L1Q9NZI6 479 aa6.72□□□□□ -1.33
VPS41-211ENST00000466017 SCN7AQ01118 1682 aa6.71□□□□□ -1.33
VPS41-211ENST00000466017 CARMIL3Q8ND23 1372 aa6.71□□□□□ -1.33
VPS41-211ENST00000466017 QSER1Q2KHR3 1735 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 H3BRB1 525 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 NFKBIEO00221 500 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 EREGO14944 169 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 EIF5BO60841 1220 aaKnown RBP6.71□□□□□ -1.34
VPS41-211ENST00000466017 SERPINB2P05120 415 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 ARID4AP29374 1257 aaPredicted RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms