RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 TDO2P48775 406 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 PLS1Q14651 629 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 TMEM132BQ14DG7 1078 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 NCAPG2Q86XI2 1143 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 C7orf61Q8IZ16 206 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 NACAP1Q9BZK3 213 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 PPP1R9AQ9ULJ8 1098 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 SYNPO2Q9UMS6 1093 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 PARP14Q460N5 1801 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 VWA5AO00534 786 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 COBLO75128 1261 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 APPP05067 770 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 FCER1AP12319 257 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 CYBAP13498 195 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 BMP8BP34820 402 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 COPB2P35606 906 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 ZMYM1Q5SVZ6 1142 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 RIOX2Q8IUF8 465 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 IFNL3Q8IZI9 196 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 OTUD7AQ8TE49 926 aaPredicted RBP17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 FSD1Q9BTV5 496 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 FBXO28Q9NVF7 368 aa17.15■□□□□ 0.34
SNRNP40-203ENST00000463988 IGKV6D-41A0A0C4DH26 115 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 CNGA1P29973 690 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 STAT3P40763 770 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 FAM83BQ5T0W9 1011 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 ZNF444Q8N0Y2 327 aaPredicted RBP17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 TRPV1Q8NER1 839 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 MKL1Q969V6 931 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 GDF15Q99988 308 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 ZBTB47Q9UFB7 747 aaPredicted RBP17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 STAP2Q9UGK3 403 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 SALL3Q9BXA9 1300 aa17.14■□□□□ 0.33
SNRNP40-203ENST00000463988 F5H6K3 240 aa17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 KLRC3Q07444 240 aa17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 HDAC1Q13547 482 aaPredicted RBP17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 SAMD1Q6SPF0 538 aaPredicted RBP17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 REPS2Q8NFH8 660 aa17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 SLF1Q9BQI6 1058 aa17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 NRBP1Q9UHY1 535 aa17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 ZNF214Q9UL59 606 aaPredicted RBP17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 DIS3Q9Y2L1 958 aaKnown RBP17.13■□□□□ 0.33
SNRNP40-203ENST00000463988 DNM1LO00429 736 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 SEPT4O43236 478 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 RAD21O60216 631 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 NDUFB10O96000 172 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 SLC3A2P08195 630 aaKnown RBP17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 PDE4BQ07343 736 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 AAMPQ13685 434 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 TICAM2Q86XR7 235 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 STK11IPQ8N1F8 1099 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 PRPF38AQ8NAV1 312 aaKnown RBP17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 MAML3Q96JK9 1138 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 CRBNQ96SW2 442 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 SEC62Q99442 399 aaKnown RBP17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 MMP19Q99542 508 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 MTMR4Q9NYA4 1195 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 CLIP2Q9UDT6 1046 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 ZMYND8Q9ULU4 1186 aaPredicted RBP17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 PLIN4Q96Q06 1357 aa17.12■□□□□ 0.33
SNRNP40-203ENST00000463988 ATP2A1O14983 1001 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 PRDM1O75626 825 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 KCTD2Q14681 263 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 ANKRD45Q5TZF3 282 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 ARRDC4Q8NCT1 418 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 NEDD1Q8NHV4 660 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 NAPBQ9H115 298 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 FRMPD3Q5JV73 1810 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 SZT2Q5T011 3432 aa17.11■□□□□ 0.33
SNRNP40-203ENST00000463988 COL11A1P12107 1806 aaPredicted RBP17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 TTLL1O95922 423 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 PPARAQ07869 468 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 LRRC26Q2I0M4 334 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 GMCL1P1Q8NEA9 526 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 EVI5LQ96CN4 794 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 CEP95Q96GE4 821 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 NUP88Q99567 741 aaPredicted RBP17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 TEX13BQ9BXU2 312 aa17.1■□□□□ 0.33
SNRNP40-203ENST00000463988 ZNFX1Q9P2E3 1918 aaKnown RBP17.09■□□□□ 0.33
SNRNP40-203ENST00000463988 ZNF792Q3KQV3 632 aa17.09■□□□□ 0.33
SNRNP40-203ENST00000463988 PPP4R3BQ5MIZ7 849 aa17.09■□□□□ 0.33
SNRNP40-203ENST00000463988 SENP6Q9GZR1 1112 aaPredicted RBP17.09■□□□□ 0.33
SNRNP40-203ENST00000463988 FEM1BQ9UK73 627 aa17.09■□□□□ 0.33
SNRNP40-203ENST00000463988 ZBED4O75132 1171 aa17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 TSPY3P0CV98 308 aa17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 TSPY8P0CW00 308 aa17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 SYN1P17600 705 aa17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 MAGEA10P43363 369 aaPredicted RBP17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 PDE1AP54750 535 aa17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 MSL3Q8N5Y2 521 aaKnown RBP17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 TINF2Q9BSI4 451 aa17.08■□□□□ 0.32
SNRNP40-203ENST00000463988 KBTBD13C9JR72 458 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 FOXP2O15409 715 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 PGK2P07205 417 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 FDX1P10109 184 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 TFAP4Q01664 338 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 PRAMEF19Q5SWL8 479 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 SNRNP48Q6IEG0 339 aaKnown RBP17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 SLC38A10Q9HBR0 1119 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms