RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 A0A1W2PQD8 194 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 GDF11O95390 407 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 MARCKSP29966 332 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-202ENST00000372405 WWC2Q6AWC2 1192 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 CABP5Q9NP86 173 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 MYOZ2Q9NPC6 264 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 PCDHB6Q9Y5E3 794 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 SRCAPQ6ZRS2 3230 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 FZD9O00144 591 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 WNT7AO00755 349 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 SEPT2Q15019 361 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 TNIP1Q15025 636 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 CAMK4Q16566 473 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 RILPL1Q5EBL4 403 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 FSIP1Q8NA03 581 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 UBA5Q9GZZ9 404 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 NUP62CLQ9H1M0 184 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 CLSTN2Q9H4D0 955 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 DDX19AQ9NUU7 478 aaKnown RBP15.86■□□□□ 0.13
PTPRF-202ENST00000372405 PGAP2Q9UHJ9 254 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 STXBP3O00186 592 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 PPP6R2O75170 966 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 LETM1O95202 739 aaPredicted RBP15.86■□□□□ 0.13
PTPRF-202ENST00000372405 EEF2P13639 858 aaKnown RBP15.86■□□□□ 0.13
PTPRF-202ENST00000372405 SMARCA1P28370 1054 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 ZNF280AP59817 542 aaPredicted RBP15.86■□□□□ 0.13
PTPRF-202ENST00000372405 FKBP1CQ5VVH2 108 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 TRIM34Q9BYJ4 488 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 TMEM39BQ9GZU3 492 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 RIOX1Q9H6W3 641 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 VEZTQ9HBM0 779 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 SH3GLB2Q9NR46 395 aa15.86■□□□□ 0.13
PTPRF-202ENST00000372405 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.86■□□□□ 0.13
PTPRF-202ENST00000372405 NLRP5P59047 1200 aa15.85■□□□□ 0.13
PTPRF-202ENST00000372405 ATP2B2Q01814 1243 aa15.85■□□□□ 0.13
PTPRF-202ENST00000372405 ZNF543Q08ER8 600 aa15.85■□□□□ 0.13
PTPRF-202ENST00000372405 ASPRV1Q53RT3 343 aa15.85■□□□□ 0.13
PTPRF-202ENST00000372405 RBM43Q6ZSC3 357 aaKnown RBP15.85■□□□□ 0.13
PTPRF-202ENST00000372405 MRPS27Q92552 414 aaKnown RBP15.85■□□□□ 0.13
PTPRF-202ENST00000372405 MKL1Q969V6 931 aa15.85■□□□□ 0.13
PTPRF-202ENST00000372405 BARHL2Q9NY43 387 aa15.85■□□□□ 0.13
PTPRF-202ENST00000372405 A0A1B0GVL5 298 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 M0R2N6 131 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 FAM160A1Q05DH4 1040 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 ABCB5Q2M3G0 1257 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 TMEM179Q6ZVK1 233 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 FMR1NBQ8N0W7 255 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-202ENST00000372405 TSPY26PQ9H489 355 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 KANSL2Q9H9L4 492 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 NYAP2Q9P242 653 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 HERC5Q9UII4 1024 aaKnown RBP15.84■□□□□ 0.13
PTPRF-202ENST00000372405 DICER1Q9UPY3 1922 aaKnown RBP15.84■□□□□ 0.13
PTPRF-202ENST00000372405 GH2P01242 217 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 GMPSP49915 693 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-202ENST00000372405 NDUFA8P51970 172 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 HEATR3Q7Z4Q2 680 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 FAM83AQ86UY5 434 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 CLIC6Q96NY7 704 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 PIGSQ96S52 555 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 TNMDQ9H2S6 317 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.84■□□□□ 0.133e-9■■■■■ 40.4
PTPRF-202ENST00000372405 SPON1Q9HCB6 807 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 VAT1LQ9HCJ6 419 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 GPCPD1Q9NPB8 672 aa15.84■□□□□ 0.13
PTPRF-202ENST00000372405 SCAF8Q9UPN6 1271 aaKnown RBP15.84■□□□□ 0.13
PTPRF-202ENST00000372405 ZNF541Q9H0D2 1346 aa15.83■□□□□ 0.13
PTPRF-202ENST00000372405 SBF1O95248 1867 aa15.83■□□□□ 0.13
PTPRF-202ENST00000372405 ATP2B1P20020 1258 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 RPS12P25398 132 aaKnown RBP15.83■□□□□ 0.12
PTPRF-202ENST00000372405 ICA1Q05084 483 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 MAP3K11Q16584 847 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 TTBK2Q6IQ55 1244 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 SHC4Q6S5L8 630 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 CCDC73Q6ZRK6 1079 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 HOMER1Q86YM7 354 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 BRMS1Q9HCU9 246 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 MRVI1Q9Y6F6 885 aa15.83■□□□□ 0.12
PTPRF-202ENST00000372405 CMA1P23946 247 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 GRIN1Q05586 938 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 MICALL2Q8IY33 904 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 CKAP2LQ8IYA6 745 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 BLIDQ8IZY5 108 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 RRP36Q96EU6 259 aaKnown RBP15.82■□□□□ 0.12
PTPRF-202ENST00000372405 PCDHA4Q9UN74 947 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 CALML3P27482 149 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 PPP4R3BQ5MIZ7 849 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 PIK3AP1Q6ZUJ8 805 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 KCTD1Q719H9 257 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 DAGLBQ8NCG7 672 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 RASGRP4Q8TDF6 673 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 FHDC1Q9C0D6 1143 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-202ENST00000372405 FBXO2Q9UK22 296 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-202ENST00000372405 GJA3Q9Y6H8 435 aa15.82■□□□□ 0.12
PTPRF-202ENST00000372405 ASTN2O75129 1339 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-202ENST00000372405 MYO1BO43795 1136 aa15.81■□□□□ 0.12
PTPRF-202ENST00000372405 PFKFB1P16118 471 aa15.81■□□□□ 0.12
PTPRF-202ENST00000372405 RBM26Q5T8P6 1007 aaKnown RBP15.81■□□□□ 0.12
PTPRF-202ENST00000372405 SAMD7Q7Z3H4 446 aa15.81■□□□□ 0.12
PTPRF-202ENST00000372405 JMYQ8N9B5 988 aa15.81■□□□□ 0.12
PTPRF-202ENST00000372405 RNF214Q8ND24 703 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms