RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 MAP3K1Q13233 1512 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 MSH2P43246 934 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 NBPF20Q3BBV1 942 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 TRIM56Q9BRZ2 755 aaKnown RBP16.71■□□□□ 0.27
COL5A1-201ENST00000371817 PAG1Q9NWQ8 432 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 STOML1Q9UBI4 398 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 GADD45BO75293 160 aaPredicted RBP16.71■□□□□ 0.27
COL5A1-201ENST00000371817 NSMCE1Q8WV22 266 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 ANGPTL3Q9Y5C1 460 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 UPF3AQ9H1J1 476 aaKnown RBP16.71■□□□□ 0.27
COL5A1-201ENST00000371817 POLKQ9UBT6 870 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 GTPBP10A4D1E9 387 aaKnown RBP16.71■□□□□ 0.27
COL5A1-201ENST00000371817 PDXDC1Q6P996 788 aa16.71■□□□□ 0.27
COL5A1-201ENST00000371817 ZC3H15Q8WU90 426 aaKnown RBP16.71■□□□□ 0.26
COL5A1-201ENST00000371817 HAUS4Q9H6D7 363 aa16.71■□□□□ 0.26
COL5A1-201ENST00000371817 TMEM63CQ9P1W3 806 aa16.71■□□□□ 0.26
COL5A1-201ENST00000371817 TTLL3Q9Y4R7 772 aa16.71■□□□□ 0.26
COL5A1-201ENST00000371817 ZNF644Q9H582 1327 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-201ENST00000371817 CDC25BP30305 580 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 HDAC4P56524 1084 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 FAM186BQ8IYM0 893 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 CYTH2Q99418 400 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 A0A1B0GW55 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4L2P0CJ85 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4L3P0CJ86 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4L4P0CJ87 422 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4L5P0CJ88 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4L6P0CJ89 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4L7P0CJ90 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 HARSP12081 509 aaKnown RBP16.7■□□□□ 0.26
COL5A1-201ENST00000371817 ZBTB41Q5SVQ8 909 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 SLC30A9Q6PML9 568 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 MCF2L2Q86YR7 1114 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 ANKRD35Q8N283 1001 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DUX4Q9UBX2 424 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 BSPRYQ5W0U4 402 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 SESTD1Q86VW0 696 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 ENOX1Q8TC92 643 aaKnown RBP16.7■□□□□ 0.26
COL5A1-201ENST00000371817 ZNF229Q9UJW7 825 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 CFTRP13569 1480 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 GARSP41250 739 aaKnown RBP16.7■□□□□ 0.26
COL5A1-201ENST00000371817 TRIM15Q9C019 465 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 TNNI2P48788 182 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 HP1BP3Q5SSJ5 553 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-201ENST00000371817 TRIM55Q9BYV6 548 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 CXorf56Q9H5V9 222 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 FAM207AQ9NSI2 230 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-201ENST00000371817 PLS1Q14651 629 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 ZNF174Q15697 407 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 DIABLOQ9NR28 239 aa16.7■□□□□ 0.26
COL5A1-201ENST00000371817 SEC24BO95487 1268 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 ESRRAP11474 423 aaPredicted RBP16.69■□□□□ 0.26
COL5A1-201ENST00000371817 TRPC1P48995 793 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 DYTNA2CJ06 578 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 SERPINB10P48595 397 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 HAUS3Q68CZ6 603 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 HDAC11Q96DB2 347 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 DPH5Q9H2P9 285 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 CD2APQ9Y5K6 639 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 HECW1Q76N89 1606 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 RPS6KB1P23443 525 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 MRPL28Q13084 256 aaKnown RBP16.69■□□□□ 0.26
COL5A1-201ENST00000371817 TTLL11Q8NHH1 800 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 RMDN2Q96LZ7 410 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 WARS2Q9UGM6 360 aaKnown RBP16.69■□□□□ 0.26
COL5A1-201ENST00000371817 CASKIN1Q8WXD9 1431 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 FAM135AQ9P2D6 1515 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 DDIT3P35638 169 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 ING2Q9H160 280 aa16.69■□□□□ 0.26
COL5A1-201ENST00000371817 GOLGA4Q13439 2230 aaKnown RBP16.69■□□□□ 0.26
COL5A1-201ENST00000371817 STAT1P42224 750 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 RASGRF2O14827 1237 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 GPC4O75487 556 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 CDKL2Q92772 493 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 ATG16L1Q676U5 607 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 NAP1L4Q99733 375 aaKnown RBP16.68■□□□□ 0.26
COL5A1-201ENST00000371817 KIAA1468Q9P260 1216 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 NCOA1Q15788 1441 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 POC1B-GALNT4F8VUJ3 575 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 DNAJC6O75061 913 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 KRT14P02533 472 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 CA8P35219 290 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 CACTINQ8WUQ7 758 aaKnown RBP16.68■□□□□ 0.26
COL5A1-201ENST00000371817 PNMA6AP0CW24 399 aaPredicted RBP16.68■□□□□ 0.26
COL5A1-201ENST00000371817 CLCN6P51797 869 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 STX1BP61266 288 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 STK24Q9Y6E0 443 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 C9orf84Q5VXU9 1444 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 PTCD1O75127 700 aaKnown RBP16.68■□□□□ 0.26
COL5A1-201ENST00000371817 NNTQ13423 1086 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 CUL3Q13618 768 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 ATP2B3Q16720 1220 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 AP2B1P63010 937 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 ICA1LQ8NDH6 482 aa16.68■□□□□ 0.26
COL5A1-201ENST00000371817 TIAM1Q13009 1591 aa16.67■□□□□ 0.26
COL5A1-201ENST00000371817 SBNO1A3KN83 1393 aa16.67■□□□□ 0.26
COL5A1-201ENST00000371817 DAB1O75553 588 aa16.67■□□□□ 0.26
COL5A1-201ENST00000371817 PI4KAP2A4QPH2 592 aa16.67■□□□□ 0.26
COL5A1-201ENST00000371817 KCNJ18B7U540 433 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms