RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 CDC25CP30307 473 aa17.58■□□□□ 0.41
RTN3-205ENST00000356000 G3BP1Q13283 466 aaKnown RBP eCLIP17.58■□□□□ 0.41
RTN3-205ENST00000356000 SAFB2Q14151 953 aaKnown RBP eCLIP17.58■□□□□ 0.411e-7■■■■□ 23.5
RTN3-205ENST00000356000 PPP4R3AQ6IN85 833 aa17.58■□□□□ 0.41
RTN3-205ENST00000356000 EMBQ6PCB8 327 aa17.58■□□□□ 0.41
RTN3-205ENST00000356000 ZIM3Q96PE6 472 aa17.58■□□□□ 0.41
RTN3-205ENST00000356000 ATP4AP20648 1035 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 PBX1P40424 430 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 EPHB4P54760 987 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 USP4Q13107 963 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 USPL1Q5W0Q7 1092 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 ATL2Q8NHH9 583 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 KDM4CQ9H3R0 1056 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 NOP53Q9NZM5 478 aaKnown RBP17.58■□□□□ 0.4
RTN3-205ENST00000356000 ZFATQ9P243 1243 aa17.58■□□□□ 0.4
RTN3-205ENST00000356000 MAFGO15525 162 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 SRGAP2O75044 1071 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 APBA1Q02410 837 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 FLIIQ13045 1269 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 HSP90AB4PQ58FF6 505 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 CCDC70Q6NSX1 233 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 SDCCAG8Q86SQ7 713 aaPredicted RBP17.57■□□□□ 0.4
RTN3-205ENST00000356000 FOXP4Q8IVH2 680 aaPredicted RBP17.57■□□□□ 0.4
RTN3-205ENST00000356000 CAVIN3Q969G5 261 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 GORASP1Q9BQQ3 440 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 WWC3Q9ULE0 1092 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 A0A0D9SFI3 127 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 ENC1O14682 589 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 TEX33O43247 280 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 ATP1A1P05023 1023 aaKnown RBP17.57■□□□□ 0.4
RTN3-205ENST00000356000 HDGFL2Q7Z4V5 671 aaPredicted RBP17.57■□□□□ 0.4
RTN3-205ENST00000356000 CNGA4Q8IV77 575 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 C1orf131Q8NDD1 294 aaKnown RBP17.57■□□□□ 0.4
RTN3-205ENST00000356000 CPLX3Q8WVH0 158 aa17.57■□□□□ 0.4
RTN3-205ENST00000356000 RBM41Q96IZ5 413 aaKnown RBP17.57■□□□□ 0.4
RTN3-205ENST00000356000 FMR1Q06787 632 aaKnown RBP eCLIP17.56■□□□□ 0.4
RTN3-205ENST00000356000 AMOTQ4VCS5 1084 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 HIBCHQ6NVY1 386 aaPredicted RBP17.56■□□□□ 0.4
RTN3-205ENST00000356000 WAPLQ7Z5K2 1190 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 METTL16Q86W50 562 aaKnown RBP17.56■□□□□ 0.4
RTN3-205ENST00000356000 POLD4Q9HCU8 107 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 ERVK-24P63145 666 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 GLE1Q53GS7 698 aaKnown RBP17.56■□□□□ 0.4
RTN3-205ENST00000356000 MCM10Q7L590 875 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 MMGT1Q8N4V1 131 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 GPATCH3Q96I76 525 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 CAPZA3Q96KX2 299 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 LEMD3Q9Y2U8 911 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 PCDHA5Q9Y5H7 936 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 EMILIN1Q9Y6C2 1016 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 DISP2A7MBM2 1401 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 ZMYM6O95789 1325 aa17.56■□□□□ 0.4
RTN3-205ENST00000356000 PPIP5K2O43314 1243 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 KRT14P02533 472 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 GNPTABQ3T906 1256 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 IQCEQ6IPM2 695 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 CCT6BQ92526 530 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 HVCN1Q96D96 273 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 L3MBTL1Q9Y468 752 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 FAM237AA0A1B0GTK4 181 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 GMNCA6NCL1 334 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 LUC7L3O95232 432 aaKnown RBP17.55■□□□□ 0.4
RTN3-205ENST00000356000 CD151P48509 253 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 APTXQ7Z2E3 356 aaKnown RBP17.55■□□□□ 0.4
RTN3-205ENST00000356000 FAM163AQ96GL9 167 aaPredicted RBP17.55■□□□□ 0.4
RTN3-205ENST00000356000 PXDNLA1KZ92 1463 aa17.55■□□□□ 0.4
RTN3-205ENST00000356000 C5orf60A6NFR6 353 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 PDE2AO00408 941 aaPredicted RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 KIF4AO95239 1232 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 CASP14P31944 242 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 BYSLQ13895 437 aaKnown RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 CD302Q8IX05 232 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 IQCKQ8N0W5 287 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 SEC16BQ96JE7 1060 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 SAMSN1Q9NSI8 373 aaKnown RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 CRB1P82279 1406 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 SMIM24O75264 130 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 HMGB1P09429 215 aaKnown RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 ABL2P42684 1182 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 CTCFP49711 727 aaPredicted RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 CLASRPQ8N2M8 674 aaKnown RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 JAKMIP2Q96AA8 810 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 PRDM16Q9HAZ2 1276 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 GOPCQ9HD26 462 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 GUCA1BQ9UMX6 200 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 CARMIL3Q8ND23 1372 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 UBN2Q6ZU65 1347 aa17.54■□□□□ 0.4
RTN3-205ENST00000356000 RGPD8O14715 1765 aaPredicted RBP17.54■□□□□ 0.4
RTN3-205ENST00000356000 ZNF233A6NK53 670 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 LRRC23Q53EV4 343 aaPredicted RBP17.53■□□□□ 0.4
RTN3-205ENST00000356000 ANO1Q5XXA6 986 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 PDLIM1O00151 329 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 DIAPH2O60879 1101 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 EIF2S2P20042 333 aaKnown RBP17.53■□□□□ 0.4
RTN3-205ENST00000356000 C2orf54Q08AI8 447 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 ITGB3BPQ13352 177 aaPredicted RBP17.53■□□□□ 0.4
RTN3-205ENST00000356000 SETDB1Q15047 1291 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 PPP1R7Q15435 360 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 CCDC38Q502W7 563 aa17.53■□□□□ 0.4
RTN3-205ENST00000356000 CYP26C1Q6V0L0 522 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms