RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DHX38Q92620 1227 aaKnown RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 TRERF1Q96PN7 1200 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 PLA2G12BQ9BX93 195 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 DDX21Q9NR30 783 aaKnown RBP eCLIP2.88□□□□□ -1.95
VPS54-202ENST00000354504 SALL1Q9NSC2 1324 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 A0A0G2JLW4 131 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 PAGE1O75459 146 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 EGFRP00533 1210 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 CHMLP26374 656 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 SLC39A6Q13433 755 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 CWF19L2Q2TBE0 894 aaKnown RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 TSHZ3Q63HK5 1081 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 GIMAP6Q6P9H5 292 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 LYPD4Q6UWN0 246 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 PIGBQ92521 554 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 GAS2L1Q99501 681 aaPredicted RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 API5Q9BZZ5 524 aaKnown RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 TSPYL4Q9UJ04 414 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 LRRFIP2Q9Y608 721 aaKnown RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 COL11A1P12107 1806 aaPredicted RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 ARID2Q68CP9 1835 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 PI4KAP2A4QPH2 592 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ZBTB42B2RXF5 422 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ERVV-2B6SEH9 535 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 GIPC1O14908 333 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 PPM1GO15355 546 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 SORBS3O60504 671 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 FAM157BP0CG42 384 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 CCT4P50991 539 aaKnown RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 GRM2Q14416 872 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 RAB3GAP1Q15042 981 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 CHRNA2Q15822 529 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 KSR2Q6VAB6 950 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 PI4KAP1Q8N8J0 262 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 ZNF384Q8TF68 577 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ZNF837Q96EG3 531 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 DCAF5Q96JK2 942 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 C8orf37Q96NL8 207 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 AGXT2Q9BYV1 514 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 LNPKQ9C0E8 428 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 RWDD1Q9H446 243 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 ELP3Q9H9T3 547 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 NID2Q14112 1375 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 RTL9Q8NET4 1388 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 BNIP3LO60238 219 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 MMP20O60882 483 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ADAM23O75077 832 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 CYP19A1P11511 503 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 HOXB4P17483 251 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 GRIA4P48058 902 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 VEGFBP49765 207 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 GCKRQ14397 625 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 NECTIN1Q15223 517 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 PLD4Q96BZ4 506 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ABHD17AQ96GS6 310 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 METTL22Q9BUU2 404 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 BICC1Q9H694 974 aaKnown RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 BRD7Q9NPI1 651 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 FAM13BQ9NYF5 915 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 VTI1BQ9UEU0 232 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 CARMIL3Q8ND23 1372 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 BTBD11A6QL63 1104 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 MSTNO14793 375 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 XYLBO75191 536 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 LARGE1O95461 756 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 CD33P20138 364 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 GNA15P30679 374 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 CRKP46108 304 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 AMPHP49418 695 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 TRIM28Q13263 835 aaKnown RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 NFKBIBQ15653 356 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ZNF662Q6ZS27 426 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 TTLL7Q6ZT98 887 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 HFE2Q6ZVN8 426 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 PPP1R42Q7Z4L9 355 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 MARCH10Q8NA82 808 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 EAF2Q96CJ1 260 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 SHISA4Q96DD7 197 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 NSUN5Q96P11 429 aaKnown RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 DNAJC25Q9H1X3 360 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 ALDH8A1Q9H2A2 487 aaPredicted RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 NOP53Q9NZM5 478 aaKnown RBP2.87□□□□□ -1.95
VPS54-202ENST00000354504 PCDH11XQ9BZA7 1347 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 PCDH11YQ9BZA8 1340 aa2.87□□□□□ -1.95
VPS54-202ENST00000354504 TCRBV5S4A2TA0A5A2 114 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 UBAP1LF5GYI3 381 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 C2CD2LO14523 706 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 EPB41L2O43491 1005 aaKnown RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 ALDH1L1O75891 902 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ADAMTS2O95450 1211 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 FGFR2P21802 821 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 HSPA4P34932 840 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ZNF157P51786 506 aaPredicted RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 ZC3H6P61129 1189 aaKnown RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 MLLT1Q03111 559 aaPredicted RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 PSMD2Q13200 908 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 CCDC30Q5VVM6 783 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 BICDL1Q6ZP65 573 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 DNAAF4Q8WXU2 420 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms