RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SHOXO15266 292 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 CBFA2T2O43439 604 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 LRRN2O75325 713 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 PPM1BO75688 479 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 TGFB1P01137 390 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 EPHX1P07099 455 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 SRFP11831 508 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 ITIH2P19823 946 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 IFRD2Q12894 506 aaPredicted RBP5.09□□□□□ -1.59
HMGB1-201ENST00000326004 BMS1Q14692 1282 aaKnown RBP5.09□□□□□ -1.59
HMGB1-201ENST00000326004 MRM1Q6IN84 353 aaKnown RBP5.09□□□□□ -1.59
HMGB1-201ENST00000326004 THAP5Q7Z6K1 395 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 NOP9Q86U38 636 aaKnown RBP5.09□□□□□ -1.59
HMGB1-201ENST00000326004 SPACA3Q8IXA5 215 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 MISP3Q96FF7 219 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 MRFAP1L1Q96HT8 127 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 APBA2Q99767 749 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 PRDM14Q9GZV8 571 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 GP6Q9HCN6 339 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 FAM86C1Q9NVL1 165 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 ZC3H7BQ9UGR2 993 aaKnown RBP5.09□□□□□ -1.59
HMGB1-201ENST00000326004 RNF112Q9ULX5 631 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 ST14Q9Y5Y6 855 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 U3KQE9 123 aa5.09□□□□□ -1.59
HMGB1-201ENST00000326004 IQCA1LA6NCM1 817 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 AGRPO00253 132 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 SIGLEC6O43699 453 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 COBLO75128 1261 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 NMIQ13287 307 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-201ENST00000326004 MSMPQ1L6U9 139 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 CLEC16AQ2KHT3 1053 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 NOL9Q5SY16 702 aaKnown RBP5.08□□□□□ -1.6
HMGB1-201ENST00000326004 PLD6Q8N2A8 252 aaKnown RBP5.08□□□□□ -1.6
HMGB1-201ENST00000326004 CRACR2BQ8N4Y2 399 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-201ENST00000326004 SYTL5Q8TDW5 730 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-201ENST00000326004 GPATCH2Q9NW75 528 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 SUSD2Q9UGT4 822 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 PLAGL2Q9UPG8 496 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 ZNF451Q9Y4E5 1061 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 FHOD1Q9Y613 1164 aa5.08□□□□□ -1.6
HMGB1-201ENST00000326004 CCDC85CA6NKD9 419 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 HOXA10P31260 410 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 SNW1Q13573 536 aaKnown RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 SLC10A6Q3KNW5 377 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 MTERF2Q49AM1 385 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 CDKAL1Q5VV42 579 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 TMC3Q7Z5M5 1100 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 ADAT2Q7Z6V5 191 aaKnown RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 STK11IPQ8N1F8 1099 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 ZNF655Q8N720 491 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 DAGLBQ8NCG7 672 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 SGSM3Q96HU1 749 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 RCC1LQ96I51 464 aaKnown RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 HRASLS5Q96KN8 279 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 HDAC8Q9BY41 377 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 DUSP15Q9H1R2 295 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 CHST7Q9NS84 486 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 SEMA3GQ9NS98 782 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 BSDC1Q9NW68 430 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 VAV3Q9UKW4 847 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 DIS3Q9Y2L1 958 aaKnown RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 SUGT1Q9Y2Z0 365 aa5.07□□□□□ -1.6
HMGB1-201ENST00000326004 SF3B6Q9Y3B4 125 aaKnown RBP5.07□□□□□ -1.6
HMGB1-201ENST00000326004 PITPNM2Q9BZ72 1349 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 FAM221BA6H8Z2 402 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 H3BS24 57 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 ZNF445P59923 1031 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 PRKCQQ04759 706 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 SV2CQ496J9 727 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 POMZP3Q6PJE2 187 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 TMPRSS7Q7RTY8 843 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 TSPYL5Q86VY4 417 aaPredicted RBP5.06□□□□□ -1.6
HMGB1-201ENST00000326004 LRRC47Q8N1G4 583 aaKnown RBP5.06□□□□□ -1.6
HMGB1-201ENST00000326004 ASB11Q8WXH4 323 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 FGD4Q96M96 766 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 HSPA12BQ96MM6 686 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 DSCC1Q9BVC3 393 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 PIF1Q9H611 641 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 GFOD1Q9NXC2 390 aa5.06□□□□□ -1.6
HMGB1-201ENST00000326004 SHISA3A0PJX4 238 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 NOP56O00567 594 aaKnown RBP5.05□□□□□ -1.6
HMGB1-201ENST00000326004 ADAM23O75077 832 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 PRAMEF1O95521 474 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 GSNP06396 782 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 ITGB7P26010 798 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 TPP2P29144 1249 aaPredicted RBP5.05□□□□□ -1.6
HMGB1-201ENST00000326004 GRB10Q13322 594 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 GAB4Q2WGN9 574 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 ARHGEF39Q8N4T4 335 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 FIBCD1Q8N539 461 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 ZNF513Q8N8E2 541 aaPredicted RBP5.05□□□□□ -1.6
HMGB1-201ENST00000326004 BVESQ8NE79 360 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 ZSWIM5Q9P217 1185 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 LRP2BPQ9P2M1 347 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 APEX2Q9UBZ4 518 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 CGGBP1Q9UFW8 167 aaPredicted RBP5.05□□□□□ -1.6
HMGB1-201ENST00000326004 ZMYM5Q9UJ78 669 aa5.05□□□□□ -1.6
HMGB1-201ENST00000326004 PRNPP04156 253 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 ENDOUP21128 410 aaKnown RBP5.04□□□□□ -1.6
HMGB1-201ENST00000326004 CD97P48960 835 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms