RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CCDC129Q6ZRS4 1044 aa23.29■■□□□ 1.32
LIME1-201ENST00000309546 ZNF444Q8N0Y2 327 aaPredicted RBP23.29■■□□□ 1.32
LIME1-201ENST00000309546 NBPF3Q9H094 633 aa23.29■■□□□ 1.32
LIME1-201ENST00000309546 ZNF287Q9HBT7 754 aa23.29■■□□□ 1.32
LIME1-201ENST00000309546 HOXC6P09630 235 aa23.28■■□□□ 1.32
LIME1-201ENST00000309546 C11orf49Q9H6J7 331 aa23.28■■□□□ 1.32
LIME1-201ENST00000309546 CYP2C19P33261 490 aa23.27■■□□□ 1.32
LIME1-201ENST00000309546 TMEM132BQ14DG7 1078 aa23.27■■□□□ 1.32
LIME1-201ENST00000309546 NUP88Q99567 741 aaPredicted RBP23.27■■□□□ 1.32
LIME1-201ENST00000309546 MROH8Q9H579 483 aa23.27■■□□□ 1.32
LIME1-201ENST00000309546 NYAP2Q9P242 653 aa23.27■■□□□ 1.32
LIME1-201ENST00000309546 ZNFX1Q9P2E3 1918 aaKnown RBP23.26■■□□□ 1.31
LIME1-201ENST00000309546 STRNO43815 780 aa23.26■■□□□ 1.31
LIME1-201ENST00000309546 CNGA1P29973 690 aa23.26■■□□□ 1.31
LIME1-201ENST00000309546 MNX1P50219 401 aaPredicted RBP23.26■■□□□ 1.31
LIME1-201ENST00000309546 PDE1AP54750 535 aa23.26■■□□□ 1.31
LIME1-201ENST00000309546 EVI5LQ96CN4 794 aa23.26■■□□□ 1.31
LIME1-201ENST00000309546 CLIP2Q9UDT6 1046 aa23.26■■□□□ 1.31
LIME1-201ENST00000309546 PPP1R9AQ9ULJ8 1098 aa23.26■■□□□ 1.31
LIME1-201ENST00000309546 SLC3A2P08195 630 aaKnown RBP23.25■■□□□ 1.31
LIME1-201ENST00000309546 PDE4BQ07343 736 aa23.25■■□□□ 1.31
LIME1-201ENST00000309546 PPARAQ07869 468 aa23.25■■□□□ 1.31
LIME1-201ENST00000309546 C7orf61Q8IZ16 206 aa23.25■■□□□ 1.31
LIME1-201ENST00000309546 LNPKQ9C0E8 428 aa23.25■■□□□ 1.31
LIME1-201ENST00000309546 STAP2Q9UGK3 403 aa23.25■■□□□ 1.31
LIME1-201ENST00000309546 IGKV6D-41A0A0C4DH26 115 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 VWA5AO00534 786 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 NDUFB10O96000 172 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 TSPY3P0CV98 308 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 TSPY8P0CW00 308 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 LHX8Q68G74 356 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 CEP95Q96GE4 821 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 SLC5A4Q9NY91 659 aa23.24■■□□□ 1.31
LIME1-201ENST00000309546 F5H6K3 240 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 COBLO75128 1261 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 SLC25A27O95847 323 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 FCER1AP12319 257 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 KLRC3Q07444 240 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 AAMPQ13685 434 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 FAM47AQ5JRC9 791 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 B4GALNT3Q6L9W6 998 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 LRRC47Q8N1G4 583 aaKnown RBP23.23■■□□□ 1.31
LIME1-201ENST00000309546 SLF1Q9BQI6 1058 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 RBM27Q9P2N5 1060 aaKnown RBP23.23■■□□□ 1.31
LIME1-201ENST00000309546 DDX20Q9UHI6 824 aaKnown RBP23.23■■□□□ 1.31
LIME1-201ENST00000309546 ADAMTS5Q9UNA0 930 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 PLXNA1Q9UIW2 1896 aa23.23■■□□□ 1.31
LIME1-201ENST00000309546 FXR1P51114 621 aaKnown RBP eCLIP23.22■■□□□ 1.31
LIME1-201ENST00000309546 OLFML2BQ68BL8 750 aa23.22■■□□□ 1.31
LIME1-201ENST00000309546 RIOX2Q8IUF8 465 aa23.22■■□□□ 1.31
LIME1-201ENST00000309546 ABRAQ8N0Z2 381 aa23.22■■□□□ 1.31
LIME1-201ENST00000309546 TRPV1Q8NER1 839 aa23.22■■□□□ 1.31
LIME1-201ENST00000309546 MMP19Q99542 508 aa23.22■■□□□ 1.31
LIME1-201ENST00000309546 RWDD1Q9H446 243 aaPredicted RBP23.22■■□□□ 1.31
LIME1-201ENST00000309546 PFASO15067 1338 aa23.22■■□□□ 1.31
LIME1-201ENST00000309546 TTLL1O95922 423 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 CYBAP13498 195 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 STAT3P40763 770 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 TFAP4Q01664 338 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 VPS53Q5VIR6 699 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 MTMR4Q9NYA4 1195 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 ZNF214Q9UL59 606 aaPredicted RBP23.21■■□□□ 1.31
LIME1-201ENST00000309546 ISY1Q9ULR0 285 aaKnown RBP23.21■■□□□ 1.31
LIME1-201ENST00000309546 PLIN4Q96Q06 1357 aa23.21■■□□□ 1.31
LIME1-201ENST00000309546 TRIM6-TRIM34B2RNG4 842 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 FOXP2O15409 715 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 MSCO60682 206 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 CTDSPL2Q05D32 466 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 KCTD2Q14681 263 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 NEDD1Q8NHV4 660 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 EXOC6Q8TAG9 804 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 ZMYND8Q9ULU4 1186 aaPredicted RBP23.2■■□□□ 1.3
LIME1-201ENST00000309546 CTDP1Q9Y5B0 961 aaPredicted RBP23.2■■□□□ 1.3
LIME1-201ENST00000309546 TRIOBPQ9H2D6 2365 aa23.2■■□□□ 1.3
LIME1-201ENST00000309546 PGK2P07205 417 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 COPB2P35606 906 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 SLC4A3P48751 1232 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 REPS2Q8NFH8 660 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 KIFC2Q96AC6 838 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 MAML3Q96JK9 1138 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 FAM227BQ96M60 508 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 HELLSQ9NRZ9 838 aa23.19■■□□□ 1.3
LIME1-201ENST00000309546 A0A0D9SFI3 127 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 ANO1Q5XXA6 986 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 SNRNP48Q6IEG0 339 aaKnown RBP23.18■■□□□ 1.3
LIME1-201ENST00000309546 SMC5Q8IY18 1101 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 CPXCR1Q8N123 301 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 PRPF38AQ8NAV1 312 aaKnown RBP23.18■■□□□ 1.3
LIME1-201ENST00000309546 MKL1Q969V6 931 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 RILPL2Q969X0 211 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 TEX13BQ9BXU2 312 aa23.18■■□□□ 1.3
LIME1-201ENST00000309546 TSPY2A6NKD2 308 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 IGHA2P01877 340 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 COL6A1P12109 1028 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 SYN1P17600 705 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 PRAMEF19Q5SWL8 479 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 SLFN13Q68D06 897 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 GMCL1P1Q8NEA9 526 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 CHMP4CQ96CF2 233 aa23.17■■□□□ 1.3
LIME1-201ENST00000309546 INCENPQ9NQS7 918 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms