RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MRFAP1L1Q96HT8 127 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 MRPL28Q13084 256 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 GOLGA5Q8TBA6 731 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 EYA3Q99504 573 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 IFNB1P01574 187 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 ATF2P15336 505 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 EEF1GP26641 437 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 TRIM45Q9H8W5 580 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 MYO1AQ9UBC5 1043 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 PYGBP11216 843 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 MYCT1Q8N699 235 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 FGFR1OP2Q9NVK5 253 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 LDHBP07195 334 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 RNF217Q8TC41 542 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 CARD6Q9BX69 1037 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 LRRC2Q9BYS8 371 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 TTC41PQ6P2S7 1318 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 PASKQ96RG2 1323 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 STAT1P42224 750 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 OR9Q1Q8NGQ5 310 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 KDM3AQ9Y4C1 1321 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 GNGT1P63211 74 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 ELF2Q15723 593 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 ESYT1Q9BSJ8 1104 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 DEXIO95424 95 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 MAGEA1P43355 309 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 TNNI1P19237 187 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 SAT1P21673 171 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 ENOX1Q8TC92 643 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 LZTS2Q9BRK4 669 aa15.24■□□□□ 0.03
CCDC88A-201ENST00000263630 TTC6Q86TZ1 520 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 NUDT16Q96DE0 195 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 CCDC51Q96ER9 411 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 ANKRD2Q9GZV1 360 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 ZNF212Q9UDV6 495 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 EXOC3O60645 756 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 NFKBIAP25963 317 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 CAPN11Q9UMQ6 739 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 A6NJR5 290 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 MAGEB6Q8N7X4 407 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 CCDC197Q8NCU1 140 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 SLC5A4Q9NY91 659 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 HDAC4P56524 1084 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 CHCHD3Q9NX63 227 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 BZW2Q9Y6E2 419 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 EHBP1L1Q8N3D4 1523 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 TRPA1O75762 1119 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 PPARGP37231 505 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 SMYD2Q9NRG4 433 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 DHX32Q7L7V1 743 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 DCLK2Q8N568 766 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 PLIN2Q99541 437 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 BEGAINQ9BUH8 593 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 CECR2Q9BXF3 1484 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 KRT87PA6NCN2 255 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 HLA-DPA1P20036 260 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 KLC3Q6P597 504 aa15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 PATL1Q86TB9 770 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-201ENST00000263630 IGSF3O75054 1194 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 RCN2Q14257 317 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 MYRIPQ8NFW9 859 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 CALCRLQ16602 461 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 ATP6V0A4Q9HBG4 840 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 POLR2DO15514 142 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 WBP4O75554 376 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 PUM3Q15397 648 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 CHEK2O96017 543 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 ANKRD13DQ6ZTN6 518 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 LLPHQ9BRT6 129 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 HELLSQ9NRZ9 838 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 PPP4R4Q6NUP7 873 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 PTPREP23469 700 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 CACTINQ8WUQ7 758 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 PHKBQ93100 1093 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 GINS2Q9Y248 185 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 XRCC5P13010 732 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 RAB3GAP1Q15042 981 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 ZKSCAN8Q15776 578 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 TRMT10CQ7L0Y3 403 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 LMCD1Q9NZU5 365 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 LRRC9Q6ZRR7 1453 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 TRIM27P14373 513 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 IFNL2Q8IZJ0 200 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 COG4Q9H9E3 785 aa15.22■□□□□ 0.03
CCDC88A-201ENST00000263630 H0YCG3 227 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 UBN1Q9NPG3 1134 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 MRPL40Q9NQ50 206 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 ST7Q9NRC1 585 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 PDE6CP51160 858 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 NME8Q8N427 588 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 KCNH3Q9ULD8 1083 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 NSFP46459 744 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 ENAHQ8N8S7 591 aaPredicted RBP15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 MTBPQ96DY7 904 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 PTPDC1A2A3K4 754 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 NGLY1Q96IV0 654 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 STX18Q9P2W9 335 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 SDSP20132 328 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms