RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 USP50Q70EL3 339 aaPredicted RBP26.08■■□□□ 1.77
CDX1-201ENST00000231656 CCAR1Q8IX12 1150 aaKnown RBP26.08■■□□□ 1.77
CDX1-201ENST00000231656 RNF26Q9BY78 433 aaPredicted RBP26.08■■□□□ 1.77
CDX1-201ENST00000231656 RBM28Q9NW13 759 aaKnown RBP26.08■■□□□ 1.77
CDX1-201ENST00000231656 WDR90Q96KV7 1748 aa26.08■■□□□ 1.77
CDX1-201ENST00000231656 TTLL1O95922 423 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 ME1P48163 572 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 JAG1P78504 1218 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 TNMDQ9H2S6 317 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 GOLPH3LQ9H4A5 285 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 PCDHA7Q9UN72 937 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 STK38Q15208 465 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 CAMK4Q16566 473 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 ANO1Q5XXA6 986 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 CCDC82Q8N4S0 544 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 KCNG4Q8TDN1 519 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 PPP2R3BQ9Y5P8 575 aa26.07■■□□□ 1.76
CDX1-201ENST00000231656 IQCA1LA6NCM1 817 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 POTECB2RU33 542 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 GH2P01242 217 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 MMP1P03956 469 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 SEPT2Q15019 361 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 KANSL2Q9H9L4 492 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 CABP5Q9NP86 173 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 CLIP2Q9UDT6 1046 aa26.06■■□□□ 1.76
CDX1-201ENST00000231656 PPP4R3BQ5MIZ7 849 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 PRAMEF18Q5VWM3 479 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 DCPSQ96C86 337 aaKnown RBP26.05■■□□□ 1.76
CDX1-201ENST00000231656 PDLIM2Q96JY6 352 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 A0A1W2PQ27 194 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 A0A1W2PQ64 194 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 A0A1W2PQD8 194 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 SPTLC2O15270 562 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 PLEKHA8P1O95397 391 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 ADALQ6DHV7 355 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 ENGASEQ8NFI3 743 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 CTCFLQ8NI51 663 aaPredicted RBP26.05■■□□□ 1.76
CDX1-201ENST00000231656 MAP3K14Q99558 947 aa26.05■■□□□ 1.76
CDX1-201ENST00000231656 TAF1DQ9H5J8 278 aaPredicted RBP26.05■■□□□ 1.76
CDX1-201ENST00000231656 PHF20L1A8MW92 1017 aa26.04■■□□□ 1.76
CDX1-201ENST00000231656 CCDC192P0DO97 292 aa26.04■■□□□ 1.76
CDX1-201ENST00000231656 SNW1Q13573 536 aaKnown RBP26.04■■□□□ 1.76
CDX1-201ENST00000231656 UVSSAQ2YD98 709 aa26.04■■□□□ 1.76
CDX1-201ENST00000231656 TMTC3Q6ZXV5 915 aa26.04■■□□□ 1.76
CDX1-201ENST00000231656 PRPF3O43395 683 aaKnown RBP26.03■■□□□ 1.76
CDX1-201ENST00000231656 CAP2P40123 477 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 GNL2Q13823 731 aaKnown RBP26.03■■□□□ 1.76
CDX1-201ENST00000231656 CCDC73Q6ZRK6 1079 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 LRRC47Q8N1G4 583 aaKnown RBP26.03■■□□□ 1.76
CDX1-201ENST00000231656 FSIP1Q8NA03 581 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 ZC3H15Q8WU90 426 aaKnown RBP26.03■■□□□ 1.76
CDX1-201ENST00000231656 HOOK2Q96ED9 719 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 NYAP2Q9P242 653 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 KCNJ14Q9UNX9 436 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 ATAD5Q96QE3 1844 aa26.03■■□□□ 1.76
CDX1-201ENST00000231656 DCAF8L1A6NGE4 600 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 EEF2P13639 858 aaKnown RBP26.02■■□□□ 1.76
CDX1-201ENST00000231656 ATP2B2Q01814 1243 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 ICA1Q05084 483 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 PKN1Q16512 942 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 SIAH1Q8IUQ4 282 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 ZBTB21Q9ULJ3 1066 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 MTMR7Q9Y216 660 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 KIF5BP33176 963 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 FAM160A1Q05DH4 1040 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 GRM4Q14833 912 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 SLC39A14Q15043 492 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 SAFBQ15424 915 aaKnown RBP eCLIP26.02■■□□□ 1.76
CDX1-201ENST00000231656 SF3A1Q15459 793 aaKnown RBP26.02■■□□□ 1.76
CDX1-201ENST00000231656 SULF1Q8IWU6 871 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 MRPS27Q92552 414 aaKnown RBP26.02■■□□□ 1.76
CDX1-201ENST00000231656 MKL1Q969V6 931 aa26.02■■□□□ 1.76
CDX1-201ENST00000231656 DCAF15Q66K64 600 aa26.01■■□□□ 1.75
CDX1-201ENST00000231656 NOSTRINQ8IVI9 506 aa26.01■■□□□ 1.75
CDX1-201ENST00000231656 CKAP2LQ8IYA6 745 aa26.01■■□□□ 1.75
CDX1-201ENST00000231656 DIS3L2Q8IYB7 885 aaKnown RBP26.01■■□□□ 1.75
CDX1-201ENST00000231656 SHISA4Q96DD7 197 aa26.01■■□□□ 1.75
CDX1-201ENST00000231656 FOXP1Q9H334 677 aaPredicted RBP26.01■■□□□ 1.75
CDX1-201ENST00000231656 BAZ2BQ9UIF8 2168 aaKnown RBP26.01■■□□□ 1.75
CDX1-201ENST00000231656 CNTNAP5Q8WYK1 1306 aa26■■□□□ 1.75
CDX1-201ENST00000231656 BTBD18B2RXH4 712 aa26■■□□□ 1.75
CDX1-201ENST00000231656 AKAP17AQ02040 695 aaKnown RBP26■■□□□ 1.75
CDX1-201ENST00000231656 TYRO3Q06418 890 aa26■■□□□ 1.75
CDX1-201ENST00000231656 PTPAQ15257 358 aa26■■□□□ 1.75
CDX1-201ENST00000231656 EAPPQ56P03 285 aaPredicted RBP26■■□□□ 1.75
CDX1-201ENST00000231656 RASGRP2Q7LDG7 609 aa26■■□□□ 1.75
CDX1-201ENST00000231656 MAD2L2Q9UI95 211 aa26■■□□□ 1.75
CDX1-201ENST00000231656 AXDND1Q5T1B0 1012 aaPredicted RBP26■■□□□ 1.75
CDX1-201ENST00000231656 PNMA8AQ86V59 439 aaPredicted RBP26■■□□□ 1.75
CDX1-201ENST00000231656 STAG2Q8N3U4 1231 aa26■■□□□ 1.75
CDX1-201ENST00000231656 ADM5C9JUS6 153 aa25.99■■□□□ 1.75
CDX1-201ENST00000231656 SUPT20HL1Q3ZLR7 823 aa25.99■■□□□ 1.75
CDX1-201ENST00000231656 KRT26Q7Z3Y9 468 aa25.99■■□□□ 1.75
CDX1-201ENST00000231656 FMR1NBQ8N0W7 255 aaPredicted RBP25.99■■□□□ 1.75
CDX1-201ENST00000231656 SRBD1Q8N5C6 995 aaKnown RBP25.99■■□□□ 1.75
CDX1-201ENST00000231656 ZNF341Q9BYN7 854 aa25.99■■□□□ 1.75
CDX1-201ENST00000231656 MRVI1Q9Y6F6 885 aa25.99■■□□□ 1.75
CDX1-201ENST00000231656 SSC5DA1L4H1 1573 aa25.99■■□□□ 1.75
CDX1-201ENST00000231656 PALM3A6NDB9 673 aaPredicted RBP25.98■■□□□ 1.75
CDX1-201ENST00000231656 CTAGE5O15320 804 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms