RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SYCE3A1L190 88 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 SPTLC2O15270 562 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 LETM1O95202 739 aaPredicted RBP20.88■□□□□ 0.93
VIM-201ENST00000224237 NR5A1Q13285 461 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 TBC1D10BQ4KMP7 808 aaPredicted RBP20.88■□□□□ 0.93
VIM-201ENST00000224237 L1TD1Q5T7N2 865 aaKnown RBP20.88■□□□□ 0.93
VIM-201ENST00000224237 FAM177A1Q8N128 213 aaPredicted RBP20.88■□□□□ 0.93
VIM-201ENST00000224237 MKL1Q969V6 931 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 CNOT7Q9UIV1 285 aaKnown RBP20.88■□□□□ 0.93
VIM-201ENST00000224237 GDF11O95390 407 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 TNNI2P48788 182 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 ATP2B2Q01814 1243 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 SLC35G1Q2M3R5 365 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 OXER1Q8TDS5 423 aa20.88■□□□□ 0.93
VIM-201ENST00000224237 LIG1P18858 919 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 CALML3P27482 149 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 NLRP5P59047 1200 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 ICA1Q05084 483 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 SLC39A14Q15043 492 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 CCDC148Q8NFR7 591 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 CABP5Q9NP86 173 aa20.87■□□□□ 0.93
VIM-201ENST00000224237 EEF2P13639 858 aaKnown RBP20.86■□□□□ 0.93
VIM-201ENST00000224237 TNFAIP1Q13829 316 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 RRP1BQ14684 758 aaKnown RBP20.86■□□□□ 0.93
VIM-201ENST00000224237 NPY5RQ15761 445 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 GPATCH4Q5T3I0 446 aaKnown RBP20.86■□□□□ 0.93
VIM-201ENST00000224237 ADALQ6DHV7 355 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 LRSAM1Q6UWE0 723 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 GAS2L3Q86XJ1 694 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 RRP36Q96EU6 259 aaKnown RBP20.86■□□□□ 0.93
VIM-201ENST00000224237 DDX19AQ9NUU7 478 aaKnown RBP20.86■□□□□ 0.93
VIM-201ENST00000224237 PCDHA7Q9UN72 937 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 TBC1D12O60347 775 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 JAG1P78504 1218 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 SEPT2Q15019 361 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 JMYQ8N9B5 988 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 RIOX1Q9H6W3 641 aa20.86■□□□□ 0.93
VIM-201ENST00000224237 SEC63Q9UGP8 760 aaKnown RBP20.86■□□□□ 0.93
VIM-201ENST00000224237 FRMPD2Q68DX3 1309 aaPredicted RBP20.85■□□□□ 0.93
VIM-201ENST00000224237 PPP6R2O75170 966 aa20.85■□□□□ 0.93
VIM-201ENST00000224237 VEGFAP15692 232 aaPredicted RBP20.85■□□□□ 0.93
VIM-201ENST00000224237 ZNF543Q08ER8 600 aa20.85■□□□□ 0.93
VIM-201ENST00000224237 GPKOWQ92917 476 aaPredicted RBP eCLIP20.85■□□□□ 0.93
VIM-201ENST00000224237 BARHL2Q9NY43 387 aa20.85■□□□□ 0.93
VIM-201ENST00000224237 A0A1W2PQ27 194 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 A0A1W2PQ64 194 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 A0A1W2PQD8 194 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 GH2P01242 217 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 PTPAQ15257 358 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 WWC2Q6AWC2 1192 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 GALNT17Q6IS24 598 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 HEATR3Q7Z4Q2 680 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 CCAR1Q8IX12 1150 aaKnown RBP20.84■□□□□ 0.93
VIM-201ENST00000224237 CPVLQ9H3G5 476 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 DACT1Q9NYF0 836 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 MRE11P49959 708 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 TOB1P50616 345 aaPredicted RBP20.84■□□□□ 0.93
VIM-201ENST00000224237 KIF4BQ2VIQ3 1234 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 CCDC12Q8WUD4 166 aaPredicted RBP20.84■□□□□ 0.93
VIM-201ENST00000224237 TNFRSF25Q93038 417 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 NUP62CLQ9H1M0 184 aa20.84■□□□□ 0.93
VIM-201ENST00000224237 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.84■□□□□ 0.93
VIM-201ENST00000224237 hCG_1984214I3L0E3 225 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 STXBP3O00186 592 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 NR1I2O75469 434 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 CCDC73Q6ZRK6 1079 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 HOMER1Q86YM7 354 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 ZNF713Q8N859 430 aaPredicted RBP20.83■□□□□ 0.92
VIM-201ENST00000224237 DCAF4Q8WV16 495 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 RNF181Q9P0P0 153 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 PGAP2Q9UHJ9 254 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 SYNPO2Q9UMS6 1093 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 NOL7Q9UMY1 257 aaKnown RBP20.83■□□□□ 0.92
VIM-201ENST00000224237 PCDHA4Q9UN74 947 aa20.83■□□□□ 0.92
VIM-201ENST00000224237 RASA3Q14644 834 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 CCDC96Q2M329 555 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 MIGA2Q7L4E1 593 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 TRPM4Q8TD43 1214 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 MRPS27Q92552 414 aaKnown RBP20.82■□□□□ 0.92
VIM-201ENST00000224237 UBA5Q9GZZ9 404 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 GRPEL1Q9HAV7 217 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 CEP131Q9UPN4 1083 aa20.82■□□□□ 0.92
VIM-201ENST00000224237 TYW1BQ6NUM6 668 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 SIAH1Q8IUQ4 282 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 BLIDQ8IZY5 108 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 GPC2Q8N158 579 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 DAGLBQ8NCG7 672 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 GMCL1P1Q8NEA9 526 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 PIGSQ96S52 555 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 GPCPD1Q9NPB8 672 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 HACL1Q9UJ83 578 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 H7C1D1 291 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 MAP3K10Q02779 954 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 FSIP1Q8NA03 581 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 VAT1LQ9HCJ6 419 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 GPRC5DQ9NZD1 345 aa20.81■□□□□ 0.92
VIM-201ENST00000224237 MARCKSP29966 332 aaPredicted RBP20.8■□□□□ 0.92
VIM-201ENST00000224237 SLC1A4P43007 532 aa20.8■□□□□ 0.92
VIM-201ENST00000224237 NAPAP54920 295 aa20.8■□□□□ 0.92
VIM-201ENST00000224237 FAM160A1Q05DH4 1040 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms