RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 FOXP2O15409 715 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 PRDM1O75626 825 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 EEF2P13639 858 aaKnown RBP21.22■□□□□ 0.99
PNKP-230ENST00000638016 SMC5Q8IY18 1101 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 IFNL3Q8IZI9 196 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 TRIB2Q92519 343 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 CCDC17Q96LX7 622 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 TANGO6Q9C0B7 1094 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 TMX2Q9Y320 296 aa21.22■□□□□ 0.99
PNKP-230ENST00000638016 A0A0G2JMZ2 1700 aa21.21■□□□□ 0.99
PNKP-230ENST00000638016 GIMAP6Q6P9H5 292 aa21.21■□□□□ 0.99
PNKP-230ENST00000638016 GPR142Q7Z601 462 aa21.21■□□□□ 0.99
PNKP-230ENST00000638016 ARHGEF10LQ9HCE6 1279 aa21.21■□□□□ 0.99
PNKP-230ENST00000638016 PATL2C9JE40 543 aaKnown RBP21.2■□□□□ 0.98
PNKP-230ENST00000638016 GJB1P08034 283 aa21.2■□□□□ 0.98
PNKP-230ENST00000638016 GJA8P48165 433 aa21.2■□□□□ 0.98
PNKP-230ENST00000638016 SAMD1Q6SPF0 538 aaPredicted RBP21.2■□□□□ 0.98
PNKP-230ENST00000638016 GTF3C2Q8WUA4 911 aaPredicted RBP21.2■□□□□ 0.98
PNKP-230ENST00000638016 VCPKMTQ9H867 229 aa21.2■□□□□ 0.98
PNKP-230ENST00000638016 RABGAP1Q9Y3P9 1069 aa21.2■□□□□ 0.98
PNKP-230ENST00000638016 GNAT2P19087 354 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 MAPK4P31152 587 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 CCL14Q16627 93 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 VPS53Q5VIR6 699 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 WDR78Q5VTH9 848 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 PRPF38BQ5VTL8 546 aaKnown RBP21.19■□□□□ 0.98
PNKP-230ENST00000638016 LBX2Q6XYB7 198 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 U2AF1L4Q8WU68 220 aaKnown RBP21.19■□□□□ 0.98
PNKP-230ENST00000638016 FAM227BQ96M60 508 aa21.19■□□□□ 0.98
PNKP-230ENST00000638016 RWDD1Q9H446 243 aaPredicted RBP21.19■□□□□ 0.98
PNKP-230ENST00000638016 COL11A1P12107 1806 aaPredicted RBP21.18■□□□□ 0.98
PNKP-230ENST00000638016 HMGCRP04035 888 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 LRRFIP1Q32MZ4 808 aaKnown RBP21.18■□□□□ 0.98
PNKP-230ENST00000638016 MORN1Q5T089 497 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 PLEKHH3Q7Z736 793 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 CCAR1Q8IX12 1150 aaKnown RBP21.18■□□□□ 0.98
PNKP-230ENST00000638016 USP6NLQ92738 828 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 EVI5LQ96CN4 794 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 ATG4CQ96DT6 458 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 DEFB118Q96PH6 123 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 NUDT12Q9BQG2 462 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 MKNK2Q9HBH9 465 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 FBXO28Q9NVF7 368 aa21.18■□□□□ 0.98
PNKP-230ENST00000638016 MYH4Q9Y623 1939 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 A0A0D9SFI3 127 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 RAD21O60216 631 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 AAMPQ13685 434 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 COG2Q14746 738 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 CHD1LQ86WJ1 897 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 SOCS4Q8WXH5 440 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 KANSL2Q9H9L4 492 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 TACC3Q9Y6A5 838 aa21.17■□□□□ 0.98
PNKP-230ENST00000638016 FLOT1O75955 427 aa21.16■□□□□ 0.98
PNKP-230ENST00000638016 LPAR1Q92633 364 aa21.16■□□□□ 0.98
PNKP-230ENST00000638016 NUP88Q99567 741 aaPredicted RBP21.16■□□□□ 0.98
PNKP-230ENST00000638016 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.16■□□□□ 0.98
PNKP-230ENST00000638016 NAPBQ9H115 298 aa21.16■□□□□ 0.98
PNKP-230ENST00000638016 INCENPQ9NQS7 918 aa21.16■□□□□ 0.98
PNKP-230ENST00000638016 PAK6Q9NQU5 681 aaPredicted RBP21.16■□□□□ 0.98
PNKP-230ENST00000638016 IGKV6D-41A0A0C4DH26 115 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 SGPL1O95470 568 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 DSG3P32926 999 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 NUCB1Q02818 461 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 PPARAQ07869 468 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 FAM83BQ5T0W9 1011 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 UBE2Q1Q7Z7E8 422 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 PLEKHM2Q8IWE5 1019 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 MOV10L1Q9BXT6 1211 aaKnown RBP21.15■□□□□ 0.98
PNKP-230ENST00000638016 SH2D4AQ9H788 454 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 CWC22Q9HCG8 908 aaKnown RBP21.15■□□□□ 0.98
PNKP-230ENST00000638016 FLRT1Q9NZU1 646 aa21.15■□□□□ 0.98
PNKP-230ENST00000638016 CEP290O15078 2479 aa21.14■□□□□ 0.98
PNKP-230ENST00000638016 WDR46O15213 610 aaKnown RBP21.14■□□□□ 0.97
PNKP-230ENST00000638016 CCNA1P78396 465 aa21.14■□□□□ 0.97
PNKP-230ENST00000638016 CTDSPL2Q05D32 466 aa21.14■□□□□ 0.97
PNKP-230ENST00000638016 NMIQ13287 307 aaPredicted RBP21.14■□□□□ 0.97
PNKP-230ENST00000638016 FAM47AQ5JRC9 791 aa21.14■□□□□ 0.97
PNKP-230ENST00000638016 ZNF589Q86UQ0 364 aaPredicted RBP21.14■□□□□ 0.97
PNKP-230ENST00000638016 NKX2-3Q8TAU0 364 aa21.14■□□□□ 0.97
PNKP-230ENST00000638016 NACAP1Q9BZK3 213 aa21.14■□□□□ 0.97
PNKP-230ENST00000638016 TRIM6-TRIM34B2RNG4 842 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 PRKAR2AP13861 404 aaKnown RBP21.13■□□□□ 0.97
PNKP-230ENST00000638016 PTPREP23469 700 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 MAP2K5Q13163 448 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 PLS1Q14651 629 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 RILPL2Q969X0 211 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 CEP95Q96GE4 821 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 APBA2Q99767 749 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 SPATC1LQ9H0A9 340 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 HOXC10Q9NYD6 342 aa21.13■□□□□ 0.97
PNKP-230ENST00000638016 FARP2O94887 1054 aaPredicted RBP21.12■□□□□ 0.97
PNKP-230ENST00000638016 XRCC5P13010 732 aaKnown RBP21.12■□□□□ 0.97
PNKP-230ENST00000638016 ZKSCAN1P17029 563 aaPredicted RBP21.12■□□□□ 0.97
PNKP-230ENST00000638016 RGS2P41220 211 aa21.12■□□□□ 0.97
PNKP-230ENST00000638016 ZNF444Q8N0Y2 327 aaPredicted RBP21.12■□□□□ 0.97
PNKP-230ENST00000638016 LRRC47Q8N1G4 583 aaKnown RBP21.12■□□□□ 0.97
PNKP-230ENST00000638016 NPLOC4Q8TAT6 608 aa21.12■□□□□ 0.97
PNKP-230ENST00000638016 DIS3LQ8TF46 1054 aaKnown RBP21.12■□□□□ 0.97
PNKP-230ENST00000638016 GOPCQ9HD26 462 aa21.12■□□□□ 0.97
PNKP-230ENST00000638016 CLIP2Q9UDT6 1046 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms