RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ERLIN2O94905 339 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 U2AF2P26368 475 aaKnown RBP eCLIP10.04□□□□□ -0.82e-9■■■■■ 29.5
PDLIM5-222ENST00000615540 CYLC1P35663 651 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 SLC1A4P43007 532 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 KIFC2Q96AC6 838 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 KAZALD1Q96I82 304 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 LRWD1Q9UFC0 647 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 KLRF2D3W0D1 207 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 PPP2R3AQ06190 1150 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 ARID5BQ14865 1188 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 NEK11Q8NG66 645 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 MINPP1Q9UNW1 487 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 ATP2B4P23634 1241 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 SPAG1Q07617 926 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 RAPGEF1Q13905 1077 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 LY9Q9HBG7 655 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 MON2Q7Z3U7 1717 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CTAGE15A4D2H0 777 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CTAGE8P0CG41 777 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 PRDX5P30044 214 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 GTF2F1P35269 517 aaKnown RBP eCLIP10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 SLC39A14Q15043 492 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CTAGE6Q86UF2 777 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 TAX1BP1Q86VP1 789 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CTAGE4Q8IX94 777 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 TRAF5O00463 557 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 MORC3Q14149 939 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 VPS36Q86VN1 386 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 MLKLQ8NB16 471 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CDHR2Q9BYE9 1310 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CPVLQ9H3G5 476 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 MAN1B1Q9UKM7 699 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 THRAP3Q9Y2W1 955 aaKnown RBP10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 KRT25Q7Z3Z0 450 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 LINC00116Q8NCU8 138 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 CTNNBL1Q8WYA6 563 aaPredicted RBP10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 FERMT2Q96AC1 680 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 SENP2Q9HC62 589 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 POLR3EQ9NVU0 708 aa10.03□□□□□ -0.8
PDLIM5-222ENST00000615540 SLIT1O75093 1534 aa10.02□□□□□ -0.8
PDLIM5-222ENST00000615540 CASP1P29466 404 aa10.02□□□□□ -0.8
PDLIM5-222ENST00000615540 TMEM87AQ8NBN3 555 aa10.02□□□□□ -0.8
PDLIM5-222ENST00000615540 MYRIPQ8NFW9 859 aa10.02□□□□□ -0.8
PDLIM5-222ENST00000615540 SRRTQ9BXP5 876 aaKnown RBP10.02□□□□□ -0.8
PDLIM5-222ENST00000615540 STK32BQ9NY57 414 aa10.02□□□□□ -0.8
PDLIM5-222ENST00000615540 CCDC66A2RUB6 948 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 PPIP5K2O43314 1243 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 GUCY1A2P33402 732 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 CDR1P51861 262 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 RGS22Q8NE09 1264 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 GOLGA1Q92805 767 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 LUC7L2Q9Y383 392 aaKnown RBP10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 RIPOR2Q9Y4F9 1068 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 LARGE2Q8N3Y3 721 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 KCNJ18B7U540 433 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 GDF11O95390 407 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 HMGB2P26583 209 aaKnown RBP10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 RNASE9P60153 205 aaKnown RBP10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 KCNJ12Q14500 433 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 MCM6Q14566 821 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 CCDC122Q5T0U0 273 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 PPP4R3AQ6IN85 833 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 SEPT12Q8IYM1 358 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 EPSTI1Q96J88 318 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 PIGSQ96S52 555 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 CCDC113Q9H0I3 377 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 AK9Q5TCS8 1911 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 PPP6R2O75170 966 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 PAFAH1B1P43034 410 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 CNNM4Q6P4Q7 775 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 USP17L2Q6R6M4 530 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 REXO1Q8N1G1 1221 aaKnown RBP10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 CCDC42Q96M95 316 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 SPAG5Q96R06 1193 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 SLF1Q9BQI6 1058 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 IMPACTQ9P2X3 320 aa10.02□□□□□ -0.81
PDLIM5-222ENST00000615540 ZNF500O60304 480 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 MYCNP04198 464 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CTR9Q6PD62 1173 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CARD6Q9BX69 1037 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 PLEKHA4Q9H4M7 779 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CFBP00751 764 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 PRR29P0C7W0 189 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 MYCLP12524 364 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 TBC1D8BQ0IIM8 1120 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 HLTFQ14527 1009 aaKnown RBP eCLIP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CYP26C1Q6V0L0 522 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CNGA4Q8IV77 575 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 SPICE1Q8N0Z3 855 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 TEKT1Q969V4 418 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CCDC94Q9BW85 323 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 PCDHA4Q9UN74 947 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 UTYO14607 1347 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CLRN2A0PK11 232 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 RPN1P04843 607 aaKnown RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 ALDH1B1P30837 517 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 UBXN2AP68543 259 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 TDRD7Q8NHU6 1098 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms