RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 KIAA0100Q14667 2235 aaKnown RBP18.03■□□□□ 0.48
LIG1-215ENST00000597901 SPDYE16A6NNV3 312 aaPredicted RBP18.03■□□□□ 0.48
LIG1-215ENST00000597901 TNRC18O15417 2968 aaPredicted RBP18.03■□□□□ 0.48
LIG1-215ENST00000597901 XRCC5P13010 732 aaKnown RBP18.03■□□□□ 0.48
LIG1-215ENST00000597901 ATP2B2Q01814 1243 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 MORN1Q5T089 497 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 EXOC6Q8TAG9 804 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 LPAR1Q92633 364 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 DEFB118Q96PH6 123 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 SH2D4AQ9H788 454 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 VCPKMTQ9H867 229 aa18.03■□□□□ 0.48
LIG1-215ENST00000597901 EPB41L4AQ9HCS5 686 aaPredicted RBP18.03■□□□□ 0.48
LIG1-215ENST00000597901 IGHDP01880 384 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 TFRCP02786 760 aaKnown RBP18.02■□□□□ 0.48
LIG1-215ENST00000597901 HMGCRP04035 888 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 RASA1P20936 1047 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 TDO2P48775 406 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 TRIM32Q13049 653 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 SMC5Q8IY18 1101 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 SPICE1Q8N0Z3 855 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 SOCS4Q8WXH5 440 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 EVI5LQ96CN4 794 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 TANGO6Q9C0B7 1094 aa18.02■□□□□ 0.48
LIG1-215ENST00000597901 PAK6Q9NQU5 681 aaPredicted RBP18.02■□□□□ 0.48
LIG1-215ENST00000597901 DDX60LQ5H9U9 1706 aaKnown RBP18.01■□□□□ 0.47
LIG1-215ENST00000597901 CAPN2P17655 700 aa18.01■□□□□ 0.47
LIG1-215ENST00000597901 DSG3P32926 999 aa18.01■□□□□ 0.47
LIG1-215ENST00000597901 B4GALNT3Q6L9W6 998 aa18.01■□□□□ 0.47
LIG1-215ENST00000597901 ZNF444Q8N0Y2 327 aaPredicted RBP18.01■□□□□ 0.47
LIG1-215ENST00000597901 TRIB2Q92519 343 aa18.01■□□□□ 0.47
LIG1-215ENST00000597901 NACAP1Q9BZK3 213 aa18.01■□□□□ 0.47
LIG1-215ENST00000597901 LNPKQ9C0E8 428 aa18.01■□□□□ 0.47
LIG1-215ENST00000597901 CWC22Q9HCG8 908 aaKnown RBP18.01■□□□□ 0.47
LIG1-215ENST00000597901 SUPT16HQ9Y5B9 1047 aaKnown RBP18.01■□□□□ 0.47
LIG1-215ENST00000597901 RBBP6Q7Z6E9 1792 aaKnown RBP18.01■□□□□ 0.47
LIG1-215ENST00000597901 RPTORQ8N122 1335 aa18■□□□□ 0.47
LIG1-215ENST00000597901 PTPREP23469 700 aa18■□□□□ 0.47
LIG1-215ENST00000597901 RGS2P41220 211 aa18■□□□□ 0.47
LIG1-215ENST00000597901 UBE2Q1Q7Z7E8 422 aa18■□□□□ 0.47
LIG1-215ENST00000597901 TRMT44Q8IYL2 757 aaKnown RBP18■□□□□ 0.47
LIG1-215ENST00000597901 XRN2Q9H0D6 950 aaKnown RBP eCLIP18■□□□□ 0.47
LIG1-215ENST00000597901 HMX1Q9NP08 348 aaPredicted RBP18■□□□□ 0.47
LIG1-215ENST00000597901 CENPFP49454 3210 aa18■□□□□ 0.47
LIG1-215ENST00000597901 MGAMO43451 1857 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 NAV1Q8NEY1 1877 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 SLC15A5A6NIM6 579 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 WDR46O15213 610 aaKnown RBP17.99■□□□□ 0.47
LIG1-215ENST00000597901 FLOT1O75955 427 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 MAP2K5Q13163 448 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 WDR78Q5VTH9 848 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 MOV10L1Q9BXT6 1211 aaKnown RBP17.99■□□□□ 0.47
LIG1-215ENST00000597901 CRISPLD2Q9H0B8 497 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 ZNF287Q9HBT7 754 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 NYAP2Q9P242 653 aa17.99■□□□□ 0.47
LIG1-215ENST00000597901 PRDM1O75626 825 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 CCL14Q16627 93 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 MAP3K21Q5TCX8 1036 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 CCDC129Q6ZRS4 1044 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 MB21D1Q8N884 522 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 NAPBQ9H115 298 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 GOPCQ9HD26 462 aa17.98■□□□□ 0.47
LIG1-215ENST00000597901 CHD1LQ86WJ1 897 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 DPF3Q92784 378 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 ATG4CQ96DT6 458 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 SPATC1LQ9H0A9 340 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 HELLSQ9NRZ9 838 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 CLIP2Q9UDT6 1046 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 ADAMTS5Q9UNA0 930 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 IVNS1ABPQ9Y6Y0 642 aa17.97■□□□□ 0.47
LIG1-215ENST00000597901 ROBO3Q96MS0 1386 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 IGKV6D-41A0A0C4DH26 115 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 F5H6K3 240 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 STRNO43815 780 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 RAD21O60216 631 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 FARP2O94887 1054 aaPredicted RBP17.96■□□□□ 0.47
LIG1-215ENST00000597901 SLC3A2P08195 630 aaKnown RBP17.96■□□□□ 0.47
LIG1-215ENST00000597901 PRKAR2AP13861 404 aaKnown RBP17.96■□□□□ 0.47
LIG1-215ENST00000597901 ZKSCAN1P17029 563 aaPredicted RBP17.96■□□□□ 0.47
LIG1-215ENST00000597901 NUCB1Q02818 461 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 PDE4BQ07343 736 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 KLRC3Q07444 240 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 PPARAQ07869 468 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 CACNB2Q08289 660 aaPredicted RBP17.96■□□□□ 0.47
LIG1-215ENST00000597901 SAMD1Q6SPF0 538 aaPredicted RBP17.96■□□□□ 0.47
LIG1-215ENST00000597901 TICAM2Q86XR7 235 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 SHCBP1Q8NEM2 672 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 MKL1Q969V6 931 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 FBXO28Q9NVF7 368 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 PCDH10Q9P2E7 1040 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 DOCK3Q8IZD9 2030 aa17.96■□□□□ 0.47
LIG1-215ENST00000597901 FOXP2O15409 715 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 HOXC6P09630 235 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 ERCC3P19447 782 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 GRB14Q14449 540 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 PLS1Q14651 629 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 FAM83BQ5T0W9 1011 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 PLEKHM2Q8IWE5 1019 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 NEDD1Q8NHV4 660 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 APBA2Q99767 749 aa17.95■□□□□ 0.46
LIG1-215ENST00000597901 HTATIP2Q9BUP3 242 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms