RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 KRT26Q7Z3Y9 468 aa17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 LRRC47Q8N1G4 583 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 CTCFLQ8NI51 663 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 MAD2L2Q9UI95 211 aa17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 ZDHHC9Q9Y397 364 aa17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 TCHHQ07283 1943 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 PALM3A6NDB9 673 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 PLEKHA8P1O95397 391 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 FMNL1O95466 1100 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 BRD1O95696 1058 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 SYT1P21579 422 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 PKP1Q13835 747 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 RAB3GAP1Q15042 981 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 DDX11Q96FC9 970 aa17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 ORC3Q9UBD5 711 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-211ENST00000595945 MYH15Q9Y2K3 1946 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 ASNSP08243 561 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 PDHBP11177 359 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 KIF5BP33176 963 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 EAPPQ56P03 285 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 DLK2Q6UY11 383 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 RASGRP2Q7LDG7 609 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 USP48Q86UV5 1035 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 RGS22Q8NE09 1264 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 GMCL1P1Q8NEA9 526 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 KLRG1Q96E93 195 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 PTPRFP10586 1907 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 CNTNAP5Q8WYK1 1306 aa17.15■□□□□ 0.34
SHKBP1-211ENST00000595945 A0A1W2PRG0 241 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 USP17L5A8MUK1 530 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 USP2O75604 605 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 PDIA4P13667 645 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 VEGFAP15692 232 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 PDCP20941 246 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 INPP5BP32019 993 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 GNAQP50148 359 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 SLC35G1Q2M3R5 365 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 NOL9Q5SY16 702 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 LARP1BQ659C4 914 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 STAG2Q8N3U4 1231 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 SRBD1Q8N5C6 995 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 PHKBQ93100 1093 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 CDCA5Q96FF9 252 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 RNF26Q9BY78 433 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 RRAGCQ9HB90 399 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 TMX2Q9Y320 296 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 KIF3AQ9Y496 699 aa17.14■□□□□ 0.33
SHKBP1-211ENST00000595945 PRPF3O43395 683 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 STX6O43752 255 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 PPFIA3O75145 1194 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 PARP1P09874 1014 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 POTEIP0CG38 1075 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 POTEJP0CG39 1038 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 SMARCA1P28370 1054 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 ATP2B2Q01814 1243 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 SSRP1Q08945 709 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 CDC37L1Q7L3B6 337 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 SCYL3Q8IZE3 742 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 FAM184AQ8NB25 1140 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 ACER1Q8TDN7 264 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 DCAF4Q8WV16 495 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 LZTS2Q9BRK4 669 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 SLC26A6Q9BXS9 759 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 MTMR6Q9Y217 621 aa17.13■□□□□ 0.33
SHKBP1-211ENST00000595945 TRPM7Q96QT4 1865 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 ZNF543Q08ER8 600 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 ASPRV1Q53RT3 343 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 USP17L2Q6R6M4 530 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 CMTR1Q8N1G2 835 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 GMCL1Q96IK5 515 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 WRNIP1Q96S55 665 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 GLIS2Q9BZE0 524 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 ARHGEF10LQ9HCE6 1279 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 WDR33Q9C0J8 1336 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 PARP14Q460N5 1801 aa17.12■□□□□ 0.33
SHKBP1-211ENST00000595945 DEXIO95424 95 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 ECE1P42892 770 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 PKN1Q16512 942 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 SLFN13Q68D06 897 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 TRIM22Q8IYM9 498 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 SPZ1Q9BXG8 430 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 FZD1Q9UP38 647 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 MTMR7Q9Y216 660 aa17.11■□□□□ 0.33
SHKBP1-211ENST00000595945 KLRF2D3W0D1 207 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 F5H6K3 240 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 UBE2Q2LH0YL09 131 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 CYTH3O43739 400 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 NDUFB10O96000 172 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 GOLGA8HP0CJ92 632 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 ZSCAN22P10073 491 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 KLRC3Q07444 240 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 MAP3K11Q16584 847 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 CCDC84Q86UT8 332 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 LDHDQ86WU2 507 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 WASF1Q92558 559 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 ZKSCAN4Q969J2 545 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 WDR18Q9BV38 432 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 RIOX1Q9H6W3 641 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms