RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 STX8Q9UNK0 236 aa32.82■■■□□ 2.84
CTDNEP1-210ENST00000574322 BTBD18B2RXH4 712 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 SPTLC2O15270 562 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 TOP1P11387 765 aaKnown RBP32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 TPRNQ4KMQ1 711 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 CIAPIN1Q6FI81 312 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 RSBN1LQ6PCB5 846 aaPredicted RBP32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 SHISA4Q96DD7 197 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 LZTS2Q9BRK4 669 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 RBSNQ9H1K0 784 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 DACT1Q9NYF0 836 aa32.81■■■□□ 2.84
CTDNEP1-210ENST00000574322 PALM3A6NDB9 673 aaPredicted RBP32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 ME1P48163 572 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 GMLQ99445 158 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 ZNF541Q9H0D2 1346 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 ZC3H4Q9UPT8 1303 aaKnown RBP32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 CEP95Q96GE4 821 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 NUP62CLQ9H1M0 184 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 FAM198AQ9UFP1 575 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 PCDHAC2Q9Y5I4 1007 aa32.8■■■□□ 2.84
CTDNEP1-210ENST00000574322 GREB1LQ9C091 1923 aaPredicted RBP32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 COL2A1P02458 1487 aaPredicted RBP32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 PSMD14O00487 310 aa32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 SHMT1P34896 483 aa32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 RBM5P52756 815 aaKnown RBP eCLIP32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 TNIP1Q15025 636 aa32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 PFKFB3Q16875 520 aaPredicted RBP32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 RBM43Q6ZSC3 357 aaKnown RBP32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 CLSTN2Q9H4D0 955 aa32.79■■■□□ 2.84
CTDNEP1-210ENST00000574322 SCG2P13521 617 aa32.78■■■□□ 2.84
CTDNEP1-210ENST00000574322 PTPAQ15257 358 aa32.78■■■□□ 2.84
CTDNEP1-210ENST00000574322 CCAR1Q8IX12 1150 aaKnown RBP32.78■■■□□ 2.84
CTDNEP1-210ENST00000574322 FUCA2Q9BTY2 467 aa32.78■■■□□ 2.84
CTDNEP1-210ENST00000574322 MTMR4Q9NYA4 1195 aa32.78■■■□□ 2.84
CTDNEP1-210ENST00000574322 SIPA1L1O43166 1804 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 PPP6R2O75170 966 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 NR1I2O75469 434 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 SMARCA1P28370 1054 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 EIF4ENIF1Q9NRA8 985 aaKnown RBP32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 SF3A1Q15459 793 aaKnown RBP32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 CFAP100Q494V2 611 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 RILPL1Q5EBL4 403 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 ENGASEQ8NFI3 743 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 CCDC17Q96LX7 622 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 VPS54Q9P1Q0 977 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 GJA3Q9Y6H8 435 aa32.77■■■□□ 2.84
CTDNEP1-210ENST00000574322 ENTPD3O75355 529 aa32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 ZFPM1Q8IX07 1006 aa32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 FAM177A1Q8N128 213 aaPredicted RBP32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 STAG2Q8N3U4 1231 aa32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 PANK2Q9BZ23 570 aa32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 SH3GLB2Q9NR46 395 aa32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 PI4KBQ9UBF8 816 aa32.76■■■□□ 2.83
CTDNEP1-210ENST00000574322 ATRNL1Q5VV63 1379 aa32.75■■■□□ 2.83
CTDNEP1-210ENST00000574322 AKR1B1P15121 316 aa32.75■■■□□ 2.83
CTDNEP1-210ENST00000574322 METTL16Q86W50 562 aaKnown RBP32.75■■■□□ 2.83
CTDNEP1-210ENST00000574322 FAM160A1Q05DH4 1040 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 DPY19L2Q6NUT2 758 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 hCG_1642624A0A1W2PR95 340 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 KRT2P35908 639 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 TOB1P50616 345 aaPredicted RBP32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 SNW1Q13573 536 aaKnown RBP32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 NPY5RQ15761 445 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 MAP3K11Q16584 847 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 PPP4R3BQ5MIZ7 849 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 AXDND1Q5T1B0 1012 aaPredicted RBP32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 CCDC73Q6ZRK6 1079 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 JMYQ8N9B5 988 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 MRPS27Q92552 414 aaKnown RBP32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 SPZ1Q9BXG8 430 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 GOLPH3LQ9H4A5 285 aa32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 MORC2Q9Y6X9 1032 aaPredicted RBP32.74■■■□□ 2.83
CTDNEP1-210ENST00000574322 FOXP4Q8IVH2 680 aaPredicted RBP32.73■■■□□ 2.83
CTDNEP1-210ENST00000574322 GPC2Q8N158 579 aa32.73■■■□□ 2.83
CTDNEP1-210ENST00000574322 OXER1Q8TDS5 423 aa32.73■■■□□ 2.83
CTDNEP1-210ENST00000574322 PRMT6Q96LA8 375 aaPredicted RBP32.73■■■□□ 2.83
CTDNEP1-210ENST00000574322 NR5A1Q13285 461 aa32.72■■■□□ 2.83
CTDNEP1-210ENST00000574322 SH3BP5LQ7L8J4 393 aa32.72■■■□□ 2.83
CTDNEP1-210ENST00000574322 TNFRSF25Q93038 417 aa32.72■■■□□ 2.83
CTDNEP1-210ENST00000574322 TNMDQ9H2S6 317 aa32.72■■■□□ 2.83
CTDNEP1-210ENST00000574322 BRMS1Q9HCU9 246 aa32.72■■■□□ 2.83
CTDNEP1-210ENST00000574322 DDTLA6NHG4 134 aaPredicted RBP32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 CACNB3P54284 484 aa32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 SLC35G1Q2M3R5 365 aa32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 FSIP1Q8NA03 581 aa32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 AGBL3Q8NEM8 1001 aa32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 DNAJC18Q9H819 358 aa32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 HDAC9Q9UKV0 1011 aa32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 ZBTB12Q9Y330 459 aaPredicted RBP32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 DDNO94850 711 aaPredicted RBP32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 PARP1P09874 1014 aaKnown RBP32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 TDRD3Q9H7E2 651 aaKnown RBP32.71■■■□□ 2.83
CTDNEP1-210ENST00000574322 SPDYE2BA6NHP3 402 aa32.7■■■□□ 2.83
CTDNEP1-210ENST00000574322 CTAGE5O15320 804 aa32.7■■■□□ 2.83
CTDNEP1-210ENST00000574322 CYTH3O43739 400 aa32.7■■■□□ 2.83
CTDNEP1-210ENST00000574322 TTLL1O95922 423 aa32.7■■■□□ 2.83
CTDNEP1-210ENST00000574322 SPDYE6P0CI01 402 aa32.7■■■□□ 2.83
CTDNEP1-210ENST00000574322 CMA1P23946 247 aa32.7■■■□□ 2.83
CTDNEP1-210ENST00000574322 KLRF2D3W0D1 207 aa32.69■■■□□ 2.82
CTDNEP1-210ENST00000574322 SNHG28P0DPA3 235 aa32.69■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms