RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 C3orf67Q6ZVT6 689 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 APTXQ7Z2E3 356 aaKnown RBP15.33■□□□□ 0.05
SHMT2-222ENST00000555774 KAT6BQ8WYB5 2073 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 CYP2D7A0A087X1C5 515 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 TADA3O75528 432 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 URI1O94763 535 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-222ENST00000555774 SCG2P13521 617 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 PBX1P40424 430 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 FAM193AP78312 1265 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 IQUBQ8NA54 791 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 CCDC51Q96ER9 411 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 NYXQ9GZU5 481 aa15.33■□□□□ 0.04
SHMT2-222ENST00000555774 DCP1AQ9NPI6 582 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-222ENST00000555774 ITIH6Q6UXX5 1313 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 CNTNAP4Q9C0A0 1308 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 CALML3P27482 149 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 KIF5BP33176 963 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 MECOMQ03112 1051 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 PFKFB3Q16875 520 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-222ENST00000555774 ARHGAP29Q52LW3 1261 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 PPFIBP1Q86W92 1011 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 PPP1R3GB7ZBB8 358 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 SMIM22K7EJ46 135 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 AFMP43652 599 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 ADKP55263 362 aaKnown RBP15.32■□□□□ 0.04
SHMT2-222ENST00000555774 ZNF174Q15697 407 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 E2F4Q16254 413 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 HSP90AA4PQ58FG1 418 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 ARL6IP4Q66PJ3 421 aaKnown RBP15.32■□□□□ 0.04
SHMT2-222ENST00000555774 SRBD1Q8N5C6 995 aaKnown RBP15.32■□□□□ 0.04
SHMT2-222ENST00000555774 SH3GLB2Q9NR46 395 aa15.32■□□□□ 0.04
SHMT2-222ENST00000555774 ADD3Q9UEY8 706 aaKnown RBP15.32■□□□□ 0.04
SHMT2-222ENST00000555774 ADAMTS2O95450 1211 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 CCDC175P0C221 793 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 HIBADHP31937 336 aaKnown RBP15.31■□□□□ 0.04
SHMT2-222ENST00000555774 NLRP5P59047 1200 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 MAP3K9P80192 1104 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 SPAG1Q07617 926 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 PTGDRQ13258 359 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 TOGARAM2Q6ZUX3 1019 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 CELF1Q92879 486 aaKnown RBP15.31■□□□□ 0.04
SHMT2-222ENST00000555774 RMND1Q9NWS8 449 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 FANCGO15287 622 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 GTPBP6O43824 516 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-222ENST00000555774 CD44P16070 742 aaKnown RBP15.31■□□□□ 0.04
SHMT2-222ENST00000555774 GNG11P61952 73 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 CCDC178Q5BJE1 867 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 CREBRFQ8IUR6 639 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 LRRN4CLQ8ND94 238 aa15.31■□□□□ 0.04
SHMT2-222ENST00000555774 KIAA1551Q9HCM1 1747 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 KDM4FA0A1W2PPD8 638 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 hCG_1642624A0A1W2PR95 340 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 ATP8B1O43520 1251 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 FECHP22830 423 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 GTF2E1P29083 439 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-222ENST00000555774 LONP1P36776 959 aaKnown RBP15.3■□□□□ 0.04
SHMT2-222ENST00000555774 CLCN6P51797 869 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 RPS8P62241 208 aaKnown RBP15.3■□□□□ 0.04
SHMT2-222ENST00000555774 PTPN21Q16825 1174 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 SPTY2D1Q68D10 685 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-222ENST00000555774 CNGA4Q8IV77 575 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 IGSF22Q8N9C0 903 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 LINC00116Q8NCU8 138 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 ZNF446Q9NWS9 450 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 MRFAP1Q9Y605 127 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 MYH2Q9UKX2 1941 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 CASZ1Q86V15 1759 aa15.3■□□□□ 0.04
SHMT2-222ENST00000555774 PDXDC2PQ6P474 469 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 FAM177A1Q8N128 213 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-222ENST00000555774 ANKS1AQ92625 1134 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 KIFC2Q96AC6 838 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 CARD6Q9BX69 1037 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 LIMA1Q9UHB6 759 aaKnown RBP15.29■□□□□ 0.04
SHMT2-222ENST00000555774 RWDD2AQ9UIY3 292 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 XDHP47989 1333 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 BAZ2AQ9UIF9 1905 aaKnown RBP15.29■□□□□ 0.04
SHMT2-222ENST00000555774 WNT7AO00755 349 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 MFAP3LO75121 409 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 SEMA3FQ13275 785 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 COL24A1Q17RW2 1714 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 PIK3AP1Q6ZUJ8 805 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 DGKHQ86XP1 1220 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 NLRP3Q96P20 1036 aa15.29■□□□□ 0.04
SHMT2-222ENST00000555774 LRRC10BA6NIK2 292 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TSPY2A6NKD2 308 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TEX33O43247 280 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TXLNAP40222 546 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 GNAQP50148 359 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TUBB2AQ13885 445 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TRIM14Q14142 442 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 KLHL10Q6JEL2 608 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TMCO3Q6UWJ1 677 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 TUBB2BQ9BVA1 445 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 WTIPA6NIX2 430 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-222ENST00000555774 NPHP1O15259 732 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 RBL2Q08999 1139 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 RC3H1Q5TC82 1133 aaKnown RBP15.28■□□□□ 0.04
SHMT2-222ENST00000555774 GPR161Q8N6U8 529 aaKnown RBP15.28■□□□□ 0.04
SHMT2-222ENST00000555774 ANKRD20A12PQ8NF67 263 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 WDR24Q96S15 920 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms