RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	VCPKMT	Q9H867	229 aa		11.21	□□□□□ -0.61
YBX3-218	ENST00000546298	MKNK2	Q9HBH9	465 aa		11.21	□□□□□ -0.61
YBX3-218	ENST00000546298	GSG1L2	A8MUP6	293 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298		H0YGN5	161 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	WDR46	O15213	610 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	STRN	O43815	780 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	CNMD	O75829	334 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	APP	P05067	770 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	PRKAR2A	P13861	404 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	MX1	P20591	662 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	PTPRE	P23469	700 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	DSG3	P32926	999 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	ATP2B2	Q01814	1243 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	HABP4	Q5JVS0	413 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	MAP3K21	Q5TCX8	1036 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	TSHZ3	Q63HK5	1081 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	POTEE	Q6S8J3	1075 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	NECAB2	Q7Z6G3	386 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	SHCBP1	Q8NEM2	672 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	GOPC	Q9HD26	462 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	SLC5A4	Q9NY91	659 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	BTBD7	Q9P203	1132 aa		11.2	□□□□□ -0.62
YBX3-218	ENST00000546298	MINDY4B	A8MYZ0	360 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	PATL2	C9JE40	543 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	GPAA1	O43292	621 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	FLOT1	O75955	427 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	EEF2	P13639	858 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	TDO2	P48775	406 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	TRIM32	Q13049	653 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	ANKRD45	Q5TZF3	282 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	SIAH1	Q8IUQ4	282 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	SPICE1	Q8N0Z3	855 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	CRBN	Q96SW2	442 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	FSD1	Q9BTV5	496 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	MOV10L1	Q9BXT6	1211 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	NBPF3	Q9H094	633 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	SPATC1L	Q9H0A9	340 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	MROH8	Q9H579	483 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	PHIP	Q8WWQ0	1821 aa		11.19	□□□□□ -0.62
YBX3-218	ENST00000546298	LOC285556	D6RIA3	1793 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	EVI5	O60447	810 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	SLC3A2	P08195	630 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	HOXC6	P09630	235 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	CACNB2	Q08289	660 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	HDAC1	Q13547	482 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	GRB14	Q14449	540 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	PLS1	Q14651	629 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	DPP9	Q86TI2	863 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	CLEC10A	Q8IUN9	316 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	PI4K2B	Q8TCG2	481 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	PAWR	Q96IZ0	340 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	YTHDC1	Q96MU7	727 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	NYAP2	Q9P242	653 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	OGDHL	Q9ULD0	1010 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	ZSWIM8	A7E2V4	1837 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	SIPA1L1	O43166	1804 aa		11.18	□□□□□ -0.62
YBX3-218	ENST00000546298	SMIM22	K7EJ46	135 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298		M0R2C6	588 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	RAD21	O60216	631 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	MSC	O60682	206 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	SLC25A27	O95847	323 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	ERCC3	P19447	782 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	COPB2	P35606	906 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	PDE4B	Q07343	736 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	CCL14	Q16627	93 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	KIAA1755	Q5JYT7	1200 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	ZMYM1	Q5SVZ6	1142 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	IFNL3	Q8IZI9	196 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	ABRA	Q8N0Z2	381 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	EVI5L	Q96CN4	794 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	ATG4C	Q96DT6	458 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	NAPB	Q9H115	298 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	COLQ	Q9Y215	455 aa	Predicted RBP	11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	PTPRF	P10586	1907 aa		11.17	□□□□□ -0.62
YBX3-218	ENST00000546298	RASA1	P20936	1047 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	PPP4R3B	Q5MIZ7	849 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	NCAPG2	Q86XI2	1143 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	TICAM2	Q86XR7	235 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	STK11IP	Q8N1F8	1099 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	RWDD1	Q9H446	243 aa	Predicted RBP	11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	C11orf49	Q9H6J7	331 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	STAP2	Q9UGK3	403 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	SYNPO2	Q9UMS6	1093 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	ROBO3	Q96MS0	1386 aa		11.16	□□□□□ -0.62
YBX3-218	ENST00000546298	FCER1A	P12319	257 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	ADORA2A	P29274	412 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	CCND3	P30281	292 aa	Predicted RBP	11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	STAT3	P40763	770 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	FAM83B	Q5T0W9	1011 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	OLFML2B	Q68BL8	750 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	CHRDL2	Q6WN34	429 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	NPLOC4	Q8TAT6	608 aa		11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	DIS3L	Q8TF46	1054 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.15	□□□□□ -0.62
YBX3-218	ENST00000546298	PCDH10	Q9P2E7	1040 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms