RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 CCDC88AQ3V6T2 1871 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 A0A1W2PQC6 194 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 H0YGN5 161 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 CES2O00748 559 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 COQ9O75208 318 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 SMNDC1O75940 238 aaKnown RBP eCLIP9.43□□□□□ -0.9
CSMD1-213ENST00000523488 STIM1Q13586 685 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 ZMYM1Q5SVZ6 1142 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.43□□□□□ -0.9
CSMD1-213ENST00000523488 TXNDC2Q86VQ3 553 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 NUTM2AQ8IVF1 878 aaPredicted RBP9.43□□□□□ -0.9
CSMD1-213ENST00000523488 SELENOOQ9BVL4 669 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 KDM4CQ9H3R0 1056 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 NFS1Q9Y697 457 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 A0A0U1RQJ8 604 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 GOLGA6CA6NDK9 693 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 ECM2O94769 699 aaPredicted RBP9.43□□□□□ -0.9
CSMD1-213ENST00000523488 FAM107AO95990 144 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 GOLGA6DP0CG33 693 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 COBLL1Q53SF7 1204 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 LRIG3Q6UXM1 1119 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 FUKQ8N0W3 1084 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 FNBP4Q8N3X1 1017 aaPredicted RBP9.43□□□□□ -0.9
CSMD1-213ENST00000523488 ATL2Q8NHH9 583 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 SMCR8Q8TEV9 937 aaPredicted RBP9.43□□□□□ -0.9
CSMD1-213ENST00000523488 ATRIPQ8WXE1 791 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 RUFY1Q96T51 708 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 GOLGA6AQ9NYA3 693 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 SAMM50Q9Y512 469 aa9.43□□□□□ -0.9
CSMD1-213ENST00000523488 SLX4Q8IY92 1834 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ROBO2Q9HCK4 1378 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 PPIP5K2O43314 1243 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ATP2B2Q01814 1243 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NAA25Q14CX7 972 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 PTGISQ16647 500 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 FIGNQ5HY92 759 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 MICALCLQ6ZW33 695 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 SLC35F6Q8N357 371 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NGDNQ8NEJ9 315 aaKnown RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ZNF507Q8TCN5 953 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 TRIM6Q9C030 488 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ETAA1Q9NY74 926 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 SOWAHDA6NJG2 315 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NDUFAB1O14561 156 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 RCAN1P53805 252 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 CASP7P55210 303 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ADKP55263 362 aaKnown RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ITGB3BPQ13352 177 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 MTF1Q14872 753 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 TAF7Q15545 349 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NAA35Q5VZE5 725 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NAIF1Q69YI7 327 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 CNGA4Q8IV77 575 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 CCDC13Q8IYE1 715 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 CCDC26Q8TAB7 109 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 SEC14L1Q92503 715 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NUDT16Q96DE0 195 aaKnown RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 IFT43Q96FT9 208 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 GDAP1L1Q96MZ0 367 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ABHD10Q9NUJ1 306 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 WWC3Q9ULE0 1092 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 CORO1CQ9ULV4 474 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 EZRP15311 586 aaKnown RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 TTC19Q6DKK2 380 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ARHGAP27Q6ZUM4 889 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 ARMC9Q7Z3E5 817 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 IQCA1Q86XH1 822 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 NEUROD6Q96NK8 337 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 FSD1Q9BTV5 496 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 SLC40A1Q9NP59 571 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 CTNNAL1Q9UBT7 734 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 HOOK1Q9UJC3 728 aaKnown RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 FBXO2Q9UK22 296 aaPredicted RBP9.42□□□□□ -0.9
CSMD1-213ENST00000523488 TMEM59LQ9UK28 342 aa9.42□□□□□ -0.9
CSMD1-213ENST00000523488 COL1A1P02452 1464 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 SOS2Q07890 1332 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 FRMD3A2A2Y4 597 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 MPHOSPH10O00566 681 aaKnown RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 PRPF3O43395 683 aaKnown RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 GBP2P32456 591 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 HERVK_113P62684 666 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 RRS1Q15050 365 aaKnown RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 NTRK3Q16288 839 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CEP85LQ5SZL2 805 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 PPFIBP1Q86W92 1011 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CREG2Q8IUH2 290 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 SLX1AQ9BQ83 275 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 IRX2Q9BZI1 471 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 GPR75-ASB3A0A0A6YYF3 556 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 GNAT3A8MTJ3 354 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 PRPHP41219 470 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 GNGT1P63211 74 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 FILIP1LQ4L180 1135 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 SPATA1Q5VX52 437 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CCDC70Q6NSX1 233 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CPLX3Q8WVH0 158 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 HAUS4Q9H6D7 363 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 ASB3Q9Y575 518 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 PJA2O43164 708 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 WFS1O76024 890 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms