RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	CCDC129	Q6ZRS4	1044 aa		29.36	■■■□□ 2.29
PVT1-204	ENST00000517525	CLEC10A	Q8IUN9	316 aa		29.36	■■■□□ 2.29
PVT1-204	ENST00000517525	TMEM106C	Q9BVX2	250 aa		29.36	■■■□□ 2.29
PVT1-204	ENST00000517525	NYAP2	Q9P242	653 aa		29.36	■■■□□ 2.29
PVT1-204	ENST00000517525	SPDYE16	A6NNV3	312 aa	Predicted RBP	29.35	■■■□□ 2.29
PVT1-204	ENST00000517525	CNMD	O75829	334 aa		29.35	■■■□□ 2.29
PVT1-204	ENST00000517525	PPARA	Q07869	468 aa		29.35	■■■□□ 2.29
PVT1-204	ENST00000517525	FAM227B	Q96M60	508 aa		29.35	■■■□□ 2.29
PVT1-204	ENST00000517525	ANAPC4	Q9UJX5	808 aa		29.35	■■■□□ 2.29
PVT1-204	ENST00000517525	GREB1L	Q9C091	1923 aa	Predicted RBP	29.35	■■■□□ 2.29
PVT1-204	ENST00000517525	RBBP6	Q7Z6E9	1792 aa	Known RBP	29.34	■■■□□ 2.29
PVT1-204	ENST00000517525		A0A0D9SFI3	127 aa		29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	POTEF	A5A3E0	1075 aa		29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	WDR46	O15213	610 aa	Known RBP	29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	ADCY3	O60266	1144 aa		29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	IRX6	P78412	446 aa	Predicted RBP	29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	PDE4B	Q07343	736 aa		29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	ZNF444	Q8N0Y2	327 aa	Predicted RBP	29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	SYNPO2	Q9UMS6	1093 aa		29.34	■■■□□ 2.29
PVT1-204	ENST00000517525	SDS	P20132	328 aa		29.33	■■■□□ 2.29
PVT1-204	ENST00000517525	RILPL2	Q969X0	211 aa		29.33	■■■□□ 2.29
PVT1-204	ENST00000517525	ZMYM6	O95789	1325 aa		29.33	■■■□□ 2.29
PVT1-204	ENST00000517525	PLIN4	Q96Q06	1357 aa		29.33	■■■□□ 2.29
PVT1-204	ENST00000517525	UBXN2A	P68543	259 aa		29.32	■■■□□ 2.28
PVT1-204	ENST00000517525	CCNA1	P78396	465 aa		29.32	■■■□□ 2.28
PVT1-204	ENST00000517525	NMI	Q13287	307 aa	Predicted RBP	29.32	■■■□□ 2.28
PVT1-204	ENST00000517525	VPS53	Q5VIR6	699 aa		29.32	■■■□□ 2.28
PVT1-204	ENST00000517525	MKL1	Q969V6	931 aa		29.32	■■■□□ 2.28
PVT1-204	ENST00000517525	DOCK3	Q8IZD9	2030 aa		29.32	■■■□□ 2.28
PVT1-204	ENST00000517525	PEX10	O60683	326 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	FGR	P09769	529 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	MB21D1	Q8N884	522 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	NEDD1	Q8NHV4	660 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	SOCS4	Q8WXH5	440 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	PAGR1	Q9BTK6	254 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	GOPC	Q9HD26	462 aa		29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	29.31	■■■□□ 2.28
PVT1-204	ENST00000517525	HIP1	O00291	1037 aa		29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	XRCC5	P13010	732 aa	Known RBP	29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	PDE4A	P27815	886 aa		29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	DSG3	P32926	999 aa		29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	USP6NL	Q92738	828 aa		29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	PORCN	Q9H237	461 aa		29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	BTBD7	Q9P203	1132 aa		29.3	■■■□□ 2.28
PVT1-204	ENST00000517525	CCDC171	Q6TFL3	1326 aa		29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	PRDM1	O75626	825 aa		29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	HSPD1	P10809	573 aa	Known RBP	29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	MFAP1	P55081	439 aa	Known RBP	29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	STK11IP	Q8N1F8	1099 aa		29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	TANGO6	Q9C0B7	1094 aa		29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	MTMR4	Q9NYA4	1195 aa		29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	ADAMTS5	Q9UNA0	930 aa		29.29	■■■□□ 2.28
PVT1-204	ENST00000517525	FGA	P02671	866 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	CAPN2	P17655	700 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	MTFR1	Q15390	333 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	MORN1	Q5T089	497 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	GPR142	Q7Z601	462 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	PLEKHH3	Q7Z736	793 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	ZNF589	Q86UQ0	364 aa	Predicted RBP	29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	SPICE1	Q8N0Z3	855 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	NUDT12	Q9BQG2	462 aa		29.28	■■■□□ 2.28
PVT1-204	ENST00000517525	ATP2B2	Q01814	1243 aa		29.27	■■■□□ 2.28
PVT1-204	ENST00000517525	PPP4R3B	Q5MIZ7	849 aa		29.27	■■■□□ 2.28
PVT1-204	ENST00000517525	RLF	Q13129	1914 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	ORC4	O43929	436 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	GJB1	P08034	283 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	ELN	P15502	786 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	EN2	P19622	333 aa	Predicted RBP	29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	CCAR1	Q8IX12	1150 aa	Known RBP	29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	SHCBP1	Q8NEM2	672 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	NKX2-3	Q8TAU0	364 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	CEP95	Q96GE4	821 aa		29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	BIN2	Q9UBW5	565 aa	Predicted RBP	29.26	■■■□□ 2.27
PVT1-204	ENST00000517525	FLOT1	O75955	427 aa		29.25	■■■□□ 2.27
PVT1-204	ENST00000517525	TTLL1	O95922	423 aa		29.25	■■■□□ 2.27
PVT1-204	ENST00000517525	INHA	P05111	366 aa		29.25	■■■□□ 2.27
PVT1-204	ENST00000517525	TSPY3	P0CV98	308 aa		29.25	■■■□□ 2.27
PVT1-204	ENST00000517525	TSPY8	P0CW00	308 aa		29.25	■■■□□ 2.27
PVT1-204	ENST00000517525	CCL5	P13501	91 aa		29.25	■■■□□ 2.27
PVT1-204	ENST00000517525	TRMT44	Q8IYL2	757 aa	Known RBP	29.25	■■■□□ 2.27
PVT1-204	ENST00000517525		F5H6K3	240 aa		29.24	■■■□□ 2.27
PVT1-204	ENST00000517525	TFAP4	Q01664	338 aa		29.24	■■■□□ 2.27
PVT1-204	ENST00000517525	KLRC3	Q07444	240 aa		29.24	■■■□□ 2.27
PVT1-204	ENST00000517525	CLIP2	Q9UDT6	1046 aa		29.24	■■■□□ 2.27
PVT1-204	ENST00000517525	CENPF	P49454	3210 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	SLC15A5	A6NIM6	579 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	HMGCR	P04035	888 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	TTC22	Q5TAA0	569 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	GMCL1P1	Q8NEA9	526 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	SPATC1L	Q9H0A9	340 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	DIAPH3	Q9NSV4	1193 aa		29.23	■■■□□ 2.27
PVT1-204	ENST00000517525	NDUFB10	O96000	172 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	PC	P11498	1178 aa	Known RBP	29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	PTPRE	P23469	700 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	RGS2	P41220	211 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	GJA8	P48165	433 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	NOV	P48745	357 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	CTDSPL2	Q05D32	466 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	ATG4C	Q96DT6	458 aa		29.22	■■■□□ 2.27
PVT1-204	ENST00000517525	MOV10L1	Q9BXT6	1211 aa	Known RBP	29.22	■■■□□ 2.27

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms