RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ARHGEF15O94989 841 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 ALX3O95076 343 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 TMEM130Q8N3G9 435 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 ZNF513Q8N8E2 541 aaPredicted RBP10.45□□□□□ -0.74
NUP54-215ENST00000514313 MFSD2AQ8NA29 543 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 DNAJB8Q8NHS0 232 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 PPP1R14AQ96A00 147 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 ACSS3Q9H6R3 686 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 MKL2Q9ULH7 1088 aa10.45□□□□□ -0.74
NUP54-215ENST00000514313 COL17A1Q9UMD9 1497 aaPredicted RBP10.44□□□□□ -0.74
NUP54-215ENST00000514313 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.44□□□□□ -0.74
NUP54-215ENST00000514313 KRBA1A5PL33 1030 aa10.44□□□□□ -0.74
NUP54-215ENST00000514313 PPP2R2AP63151 447 aa10.44□□□□□ -0.74
NUP54-215ENST00000514313 CBX2Q14781 532 aaPredicted RBP10.44□□□□□ -0.74
NUP54-215ENST00000514313 GRIK4Q16099 956 aa10.44□□□□□ -0.74
NUP54-215ENST00000514313 ZNF227Q86WZ6 799 aa10.44□□□□□ -0.74
NUP54-215ENST00000514313 RPUSD2Q8IZ73 545 aaKnown RBP10.44□□□□□ -0.74
NUP54-215ENST00000514313 KISS1RQ969F8 398 aaPredicted RBP10.44□□□□□ -0.74
NUP54-215ENST00000514313 MIPEPQ99797 713 aa10.44□□□□□ -0.74
NUP54-215ENST00000514313 AARSD1Q9BTE6 412 aaKnown RBP10.44□□□□□ -0.74
NUP54-215ENST00000514313 LRP2BPQ9P2M1 347 aa10.44□□□□□ -0.74
NUP54-215ENST00000514313 TRAV20A0A0B4J274 112 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 SHOXO15266 292 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 ITGAVP06756 1048 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 PRRT3Q5FWE3 981 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 FAM209AQ5JX71 171 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 LCE2AQ5TA79 106 aaPredicted RBP10.43□□□□□ -0.74
NUP54-215ENST00000514313 NBPF12Q5TAG4 269 aaPredicted RBP10.43□□□□□ -0.74
NUP54-215ENST00000514313 LRRN4CLQ8ND94 238 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 NCOA5Q9HCD5 579 aaKnown RBP10.43□□□□□ -0.74
NUP54-215ENST00000514313 DAGLAQ9Y4D2 1042 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 ZNF451Q9Y4E5 1061 aa10.43□□□□□ -0.74
NUP54-215ENST00000514313 VIL1P09327 827 aaKnown RBP10.42□□□□□ -0.74
NUP54-215ENST00000514313 NINJ1Q92982 152 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 MFSD3Q96ES6 412 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 KREMEN1Q96MU8 473 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 CDC6Q99741 560 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 GBP3Q9H0R5 595 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 AKTIPQ9H8T0 292 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 CEP131Q9UPN4 1083 aa10.42□□□□□ -0.74
NUP54-215ENST00000514313 MRPS23Q9Y3D9 190 aaKnown RBP10.42□□□□□ -0.74
NUP54-215ENST00000514313 CCDC163A0A0D9SF12 145 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 PIK3R2O00459 728 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 IRS4O14654 1257 aaPredicted RBP10.41□□□□□ -0.74
NUP54-215ENST00000514313 TBX1O43435 398 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 GAS2O43903 313 aaKnown RBP10.41□□□□□ -0.74
NUP54-215ENST00000514313 PABPC4Q13310 644 aaKnown RBP eCLIP10.41□□□□□ -0.74
NUP54-215ENST00000514313 HSP90AA2PQ14568 343 aaPredicted RBP10.41□□□□□ -0.74
NUP54-215ENST00000514313 TM4SF20Q53R12 229 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 CDPF1Q6NVV7 123 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 LETMD1Q6P1Q0 360 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 ADAT2Q7Z6V5 191 aaKnown RBP10.41□□□□□ -0.74
NUP54-215ENST00000514313 DHX37Q8IY37 1157 aaKnown RBP10.41□□□□□ -0.74
NUP54-215ENST00000514313 NIM1KQ8IY84 436 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 VWCEQ96DN2 955 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 DHRS4Q9BTZ2 278 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 SEMA6CQ9H3T2 930 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 SUGT1Q9Y2Z0 365 aa10.41□□□□□ -0.74
NUP54-215ENST00000514313 TRBV23-1A0A0A0MS06 115 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 SART1O43290 800 aaKnown RBP10.4□□□□□ -0.74
NUP54-215ENST00000514313 SLITRK5O94991 958 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 GLB1P16278 677 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 CD247P20963 164 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 RNF4P78317 190 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 ANKRD39Q53RE8 183 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 Q6ZS46 218 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 CDH24Q86UP0 819 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 C7orf61Q8IZ16 206 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 RIN3Q8TB24 985 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 LGR6Q9HBX8 967 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 NOP53Q9NZM5 478 aaKnown RBP10.4□□□□□ -0.74
NUP54-215ENST00000514313 WHRNQ9P202 907 aa10.4□□□□□ -0.74
NUP54-215ENST00000514313 RAPGEF3O95398 923 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 GRIA2P42262 883 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 USP11P51784 963 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 AUHQ13825 339 aaKnown RBP10.39□□□□□ -0.75
NUP54-215ENST00000514313 KRT26Q7Z3Y9 468 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 ADCY4Q8NFM4 1077 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 CEP41Q9BYV8 373 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 GP6Q9HCN6 339 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 USP21Q9UK80 565 aa10.39□□□□□ -0.75
NUP54-215ENST00000514313 PLD2O14939 933 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 DYNC1LI2O43237 492 aaPredicted RBP10.38□□□□□ -0.75
NUP54-215ENST00000514313 RFPL3O75679 317 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 PPM1BO75688 479 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 SGO2Q562F6 1265 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 THNSL2Q86YJ6 484 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 BVESQ8NE79 360 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 FBLIM1Q8WUP2 373 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 PSMG3-AS1Q96PY0 264 aa10.38□□□□□ -0.75
NUP54-215ENST00000514313 RBAK-RBAKDNI3L0D1 243 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 CAPNS1P04632 268 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 NFICP08651 508 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 FGFR1P11362 822 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 ITGA4P13612 1032 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.37□□□□□ -0.75
NUP54-215ENST00000514313 RNF141Q8WVD5 230 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 LENG1Q96BZ8 264 aaPredicted RBP10.37□□□□□ -0.75
NUP54-215ENST00000514313 MRGPRX3Q96LB0 322 aa10.37□□□□□ -0.75
NUP54-215ENST00000514313 IPO9Q96P70 1041 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms