RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 PXYLP1Q8TE99 480 aa16.78■□□□□ 0.28
VTI1A-206ENST00000489142 CCDC17Q96LX7 622 aa16.78■□□□□ 0.28
VTI1A-206ENST00000489142 ARHGEF10LQ9HCE6 1279 aa16.78■□□□□ 0.28
VTI1A-206ENST00000489142 RAD21O60216 631 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 PRDM1O75626 825 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 RASA1P20936 1047 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 IRX6P78412 446 aaPredicted RBP16.77■□□□□ 0.28
VTI1A-206ENST00000489142 LRRFIP1Q32MZ4 808 aaKnown RBP16.77■□□□□ 0.28
VTI1A-206ENST00000489142 SBK1Q52WX2 424 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 ZMYM1Q5SVZ6 1142 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 PRPF38BQ5VTL8 546 aaKnown RBP16.77■□□□□ 0.28
VTI1A-206ENST00000489142 GPR142Q7Z601 462 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 GTF3C2Q8WUA4 911 aaPredicted RBP16.77■□□□□ 0.28
VTI1A-206ENST00000489142 TRIB2Q92519 343 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 CWC22Q9HCG8 908 aaKnown RBP16.77■□□□□ 0.28
VTI1A-206ENST00000489142 RABGAP1Q9Y3P9 1069 aa16.77■□□□□ 0.28
VTI1A-206ENST00000489142 ROBO3Q96MS0 1386 aa16.77■□□□□ 0.27
VTI1A-206ENST00000489142 GJB1P08034 283 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 MAPK4P31152 587 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 GJA8P48165 433 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 GIMAP6Q6P9H5 292 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 PLEKHH3Q7Z736 793 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 IFNL3Q8IZI9 196 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 U2AF1L4Q8WU68 220 aaKnown RBP16.76■□□□□ 0.27
VTI1A-206ENST00000489142 DEFB118Q96PH6 123 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 NUDT12Q9BQG2 462 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.76■□□□□ 0.27
VTI1A-206ENST00000489142 VCPKMTQ9H867 229 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 MKNK2Q9HBH9 465 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 STAP2Q9UGK3 403 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 TMX2Q9Y320 296 aa16.76■□□□□ 0.27
VTI1A-206ENST00000489142 PATL2C9JE40 543 aaKnown RBP16.75■□□□□ 0.27
VTI1A-206ENST00000489142 HMGCRP04035 888 aa16.75■□□□□ 0.27
VTI1A-206ENST00000489142 GNAT2P19087 354 aa16.75■□□□□ 0.27
VTI1A-206ENST00000489142 CCL14Q16627 93 aa16.75■□□□□ 0.27
VTI1A-206ENST00000489142 RWDD1Q9H446 243 aaPredicted RBP16.75■□□□□ 0.27
VTI1A-206ENST00000489142 KANSL2Q9H9L4 492 aa16.75■□□□□ 0.27
VTI1A-206ENST00000489142 FLOT1O75955 427 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 COG2Q14746 738 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 MORN1Q5T089 497 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 LBX2Q6XYB7 198 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 SMC5Q8IY18 1101 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 SOCS4Q8WXH5 440 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 EVI5LQ96CN4 794 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.74■□□□□ 0.27
VTI1A-206ENST00000489142 SH2D4AQ9H788 454 aa16.74■□□□□ 0.27
VTI1A-206ENST00000489142 FOXP2O15409 715 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 SGPL1O95470 568 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 CCNA1P78396 465 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 AAMPQ13685 434 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 PLS1Q14651 629 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 VPS53Q5VIR6 699 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 NKX2-3Q8TAU0 364 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 LPAR1Q92633 364 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 USP6NLQ92738 828 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 ATG4CQ96DT6 458 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 FAM227BQ96M60 508 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 NUP88Q99567 741 aaPredicted RBP16.73■□□□□ 0.27
VTI1A-206ENST00000489142 NACAP1Q9BZK3 213 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 NAPBQ9H115 298 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 PAK6Q9NQU5 681 aaPredicted RBP16.73■□□□□ 0.27
VTI1A-206ENST00000489142 FBXO28Q9NVF7 368 aa16.73■□□□□ 0.27
VTI1A-206ENST00000489142 A0A0D9SFI3 127 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 TRIM6-TRIM34B2RNG4 842 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 WDR46O15213 610 aaKnown RBP16.72■□□□□ 0.27
VTI1A-206ENST00000489142 FARP2O94887 1054 aaPredicted RBP16.72■□□□□ 0.27
VTI1A-206ENST00000489142 TFRCP02786 760 aaKnown RBP16.72■□□□□ 0.27
VTI1A-206ENST00000489142 PRKAR2AP13861 404 aaKnown RBP16.72■□□□□ 0.27
VTI1A-206ENST00000489142 ZKSCAN1P17029 563 aaPredicted RBP16.72■□□□□ 0.27
VTI1A-206ENST00000489142 RGS2P41220 211 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 PPARAQ07869 468 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 FAM47AQ5JRC9 791 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 FAM83BQ5T0W9 1011 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 CHD1LQ86WJ1 897 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 MOV10L1Q9BXT6 1211 aaKnown RBP16.72■□□□□ 0.27
VTI1A-206ENST00000489142 GOPCQ9HD26 462 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 INCENPQ9NQS7 918 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 HOXC10Q9NYD6 342 aa16.72■□□□□ 0.27
VTI1A-206ENST00000489142 DSG3P32926 999 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 NUCB1Q02818 461 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 CTDSPL2Q05D32 466 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 ZNF444Q8N0Y2 327 aaPredicted RBP16.71■□□□□ 0.27
VTI1A-206ENST00000489142 RILPL2Q969X0 211 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 APBA2Q99767 749 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 SPATC1LQ9H0A9 340 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 FLRT1Q9NZU1 646 aa16.71■□□□□ 0.27
VTI1A-206ENST00000489142 FRMPD3Q5JV73 1810 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 ALPK3Q96L96 1907 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 ZNFX1Q9P2E3 1918 aaKnown RBP16.7■□□□□ 0.26
VTI1A-206ENST00000489142 XRCC5P13010 732 aaKnown RBP16.7■□□□□ 0.26
VTI1A-206ENST00000489142 PTPREP23469 700 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 CACNB2Q08289 660 aaPredicted RBP16.7■□□□□ 0.26
VTI1A-206ENST00000489142 MAP2K5Q13163 448 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 UBE2Q1Q7Z7E8 422 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 PLEKHM2Q8IWE5 1019 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 DIS3LQ8TF46 1054 aaKnown RBP16.7■□□□□ 0.26
VTI1A-206ENST00000489142 CHMP4CQ96CF2 233 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 CEP95Q96GE4 821 aa16.7■□□□□ 0.26
VTI1A-206ENST00000489142 HMX1Q9NP08 348 aaPredicted RBP16.7■□□□□ 0.26
VTI1A-206ENST00000489142 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 316.7 ms