RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 MTA3Q9BTC8 594 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 DSCC1Q9BVC3 393 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 TCHHQ07283 1943 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 ZNF532Q9HCE3 1301 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 IGHA2P01877 340 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 ANKRD45Q5TZF3 282 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 ANGEL2Q5VTE6 544 aaKnown RBP8.84□□□□□ -0.99
USP4-211ENST00000485450 RNF20Q5VTR2 975 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 C16orf86Q6ZW13 317 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 ERO1AQ96HE7 468 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 C12orf42Q96LP6 360 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 TCP11L1Q9NUJ3 509 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 GSG1L2A8MUP6 293 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 COQ9O75208 318 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 TM4SF4P48230 202 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 PPP2R5AQ15172 486 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 ANKRD23Q86SG2 305 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 KCTD17Q8N5Z5 321 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 ANKS1AQ92625 1134 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 TATDN2Q93075 761 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 OSBP2Q969R2 916 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.84□□□□□ -0.996e-7■■■■□ 23.1
USP4-211ENST00000485450 EPB41L4AQ9HCS5 686 aaPredicted RBP8.84□□□□□ -0.99
USP4-211ENST00000485450 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.84□□□□□ -0.99
USP4-211ENST00000485450 FHOD1Q9Y613 1164 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 TMEM88BA6NKF7 163 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 RAD21O60216 631 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 PTGS1P23219 599 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 PLA2G4AP47712 749 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 LRRFIP1Q32MZ4 808 aaKnown RBP8.84□□□□□ -0.99
USP4-211ENST00000485450 USP48Q86UV5 1035 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 SH3RF3Q8TEJ3 882 aaPredicted RBP8.84□□□□□ -0.99
USP4-211ENST00000485450 UBXN6Q9BZV1 441 aa8.84□□□□□ -0.99
USP4-211ENST00000485450 WDR19Q8NEZ3 1342 aa8.83□□□□□ -1
USP4-211ENST00000485450 M0R2C6 588 aa8.83□□□□□ -1
USP4-211ENST00000485450 TEX35Q5T0J7 233 aa8.83□□□□□ -1
USP4-211ENST00000485450 FOXD4L5Q5VV16 416 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 LBX2Q6XYB7 198 aa8.83□□□□□ -1
USP4-211ENST00000485450 KRBA2Q6ZNG9 492 aa8.83□□□□□ -1
USP4-211ENST00000485450 RASAL3Q86YV0 1011 aa8.83□□□□□ -1
USP4-211ENST00000485450 KIAA0825Q8IV33 1275 aa8.83□□□□□ -1
USP4-211ENST00000485450 SPC24Q8NBT2 197 aa8.83□□□□□ -1
USP4-211ENST00000485450 FOXD4L4Q8WXT5 416 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 WDR18Q9BV38 432 aa8.83□□□□□ -1
USP4-211ENST00000485450 MAF1Q9H063 256 aa8.83□□□□□ -1
USP4-211ENST00000485450 NBPF3Q9H094 633 aa8.83□□□□□ -1
USP4-211ENST00000485450 DEFB129Q9H1M3 183 aa8.83□□□□□ -1
USP4-211ENST00000485450 DCP1AQ9NPI6 582 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 ZNF215Q9UL58 517 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 H2AFXP16104 143 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 SDSP20132 328 aa8.83□□□□□ -1
USP4-211ENST00000485450 MTA1Q13330 715 aa8.83□□□□□ -1
USP4-211ENST00000485450 C12orf60Q5U649 245 aa8.83□□□□□ -1
USP4-211ENST00000485450 NAA16Q6N069 864 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 VPS37DQ86XT2 251 aa8.83□□□□□ -1
USP4-211ENST00000485450 PUS7LQ9H0K6 701 aaKnown RBP8.83□□□□□ -1
USP4-211ENST00000485450 SCP2P22307 547 aa8.83□□□□□ -1
USP4-211ENST00000485450 TNNI2P48788 182 aa8.83□□□□□ -1
USP4-211ENST00000485450 CUL4AQ13619 759 aa8.83□□□□□ -1
USP4-211ENST00000485450 DIXDC1Q155Q3 683 aa8.83□□□□□ -1
USP4-211ENST00000485450 TBC1D10BQ4KMP7 808 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 CEP135Q66GS9 1140 aa8.83□□□□□ -1
USP4-211ENST00000485450 FOXP4Q8IVH2 680 aaPredicted RBP8.83□□□□□ -1
USP4-211ENST00000485450 SWAP70Q9UH65 585 aa8.83□□□□□ -1
USP4-211ENST00000485450 SNCAIPQ9Y6H5 919 aa8.83□□□□□ -1
USP4-211ENST00000485450 GJA3Q9Y6H8 435 aa8.83□□□□□ -1
USP4-211ENST00000485450 SPDYE5A6NIY4 337 aa8.82□□□□□ -1
USP4-211ENST00000485450 ORC4O43929 436 aa8.82□□□□□ -1
USP4-211ENST00000485450 BAG3O95817 575 aa8.82□□□□□ -1
USP4-211ENST00000485450 NFIAQ12857 509 aa8.82□□□□□ -1
USP4-211ENST00000485450 DCPSQ96C86 337 aaKnown RBP8.82□□□□□ -1
USP4-211ENST00000485450 MS4A4AQ96JQ5 239 aa8.82□□□□□ -1
USP4-211ENST00000485450 NEUROD6Q96NK8 337 aa8.82□□□□□ -1
USP4-211ENST00000485450 ARPP21Q9UBL0 812 aaPredicted RBP8.82□□□□□ -1
USP4-211ENST00000485450 RRP15Q9Y3B9 282 aaKnown RBP8.82□□□□□ -1
USP4-211ENST00000485450 GUCY1A2P33402 732 aa8.82□□□□□ -1
USP4-211ENST00000485450 ELF2Q15723 593 aa8.82□□□□□ -1
USP4-211ENST00000485450 LCORLQ8N3X6 602 aa8.82□□□□□ -1
USP4-211ENST00000485450 ZNF526Q8TF50 670 aaPredicted RBP8.82□□□□□ -1
USP4-211ENST00000485450 SMARCE1Q969G3 411 aa8.82□□□□□ -1
USP4-211ENST00000485450 INTS4Q96HW7 963 aaKnown RBP8.82□□□□□ -1
USP4-211ENST00000485450 TACC3Q9Y6A5 838 aa8.82□□□□□ -1
USP4-211ENST00000485450 PLXNA1Q9UIW2 1896 aa8.82□□□□□ -1
USP4-211ENST00000485450 CTNND1O60716 968 aaKnown RBP8.81□□□□□ -1
USP4-211ENST00000485450 CHMLP26374 656 aa8.81□□□□□ -1
USP4-211ENST00000485450 MAP2K2P36507 400 aa8.81□□□□□ -1
USP4-211ENST00000485450 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.81□□□□□ -1
USP4-211ENST00000485450 REXO1L1PQ8IX06 675 aa8.81□□□□□ -1
USP4-211ENST00000485450 ZFPM1Q8IX07 1006 aa8.81□□□□□ -1
USP4-211ENST00000485450 MNS1Q8NEH6 495 aa8.81□□□□□ -1
USP4-211ENST00000485450 MKL1Q969V6 931 aa8.81□□□□□ -1
USP4-211ENST00000485450 TMX3Q96JJ7 454 aa8.81□□□□□ -1
USP4-211ENST00000485450 CWC15Q9P013 229 aaKnown RBP8.81□□□□□ -1
USP4-211ENST00000485450 ZSWIM8A7E2V4 1837 aa8.81□□□□□ -1
USP4-211ENST00000485450 DDTLA6NHG4 134 aaPredicted RBP8.81□□□□□ -1
USP4-211ENST00000485450 ADM5C9JUS6 153 aa8.81□□□□□ -1
USP4-211ENST00000485450 MYO1BO43795 1136 aa8.81□□□□□ -1
USP4-211ENST00000485450 SHMT1P34896 483 aa8.81□□□□□ -1
USP4-211ENST00000485450 MCM2P49736 904 aa8.81□□□□□ -1
USP4-211ENST00000485450 TPM4P67936 248 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms