RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 PUS7Q96PZ0 661 aaKnown RBP8.79□□□□□ -1
VPS50-212ENST00000476413 KLHL25Q9H0H3 589 aa8.79□□□□□ -1
VPS50-212ENST00000476413 EPN3Q9H201 632 aa8.79□□□□□ -1
VPS50-212ENST00000476413 FANCLQ9NW38 375 aa8.79□□□□□ -1
VPS50-212ENST00000476413 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.79□□□□□ -1
VPS50-212ENST00000476413 CNTNAP4Q9C0A0 1308 aa8.79□□□□□ -1
VPS50-212ENST00000476413 ZNF143P52747 638 aaPredicted RBP8.78□□□□□ -1
VPS50-212ENST00000476413 CDK5R2Q13319 367 aa8.78□□□□□ -1
VPS50-212ENST00000476413 CDH24Q86UP0 819 aa8.78□□□□□ -1
VPS50-212ENST00000476413 YIPF2Q9BWQ6 316 aa8.78□□□□□ -1
VPS50-212ENST00000476413 PRDM10Q9NQV6 1147 aa8.78□□□□□ -1
VPS50-212ENST00000476413 APEX2Q9UBZ4 518 aa8.78□□□□□ -1
VPS50-212ENST00000476413 PTCH2Q9Y6C5 1203 aa8.78□□□□□ -1
VPS50-212ENST00000476413 EOMESO95936 686 aa8.77□□□□□ -1.01
VPS50-212ENST00000476413 FAM153BP0C7A2 387 aa8.77□□□□□ -1.01
VPS50-212ENST00000476413 CHMP4BP1P59074 171 aa8.77□□□□□ -1.01
VPS50-212ENST00000476413 MAP7Q14244 749 aa8.77□□□□□ -1.01
VPS50-212ENST00000476413 ANKRD39Q53RE8 183 aa8.77□□□□□ -1.01
VPS50-212ENST00000476413 SPATA9Q9BWV2 254 aa8.77□□□□□ -1.01
VPS50-212ENST00000476413 FAM95CA0A1B0GW59 222 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 ANKRD34BA5PLL1 514 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 ANKRD62A6NC57 917 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 CDC45O75419 566 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 CD163Q86VB7 1156 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 CCDC144CPQ8IYA2 1237 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 GATA6Q92908 595 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 DUSP23Q9BVJ7 150 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 ZNF451Q9Y4E5 1061 aa8.76□□□□□ -1.01
VPS50-212ENST00000476413 CAPNS1P04632 268 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 FAM214BQ7L5A3 538 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 KIAA0907Q7Z7F0 614 aaPredicted RBP8.75□□□□□ -1.01
VPS50-212ENST00000476413 TOP6BLQ8N6T0 577 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 RNF141Q8WVD5 230 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 APPBP2Q92624 585 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 SGSM3Q96HU1 749 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 FBXL18Q96ME1 805 aa8.75□□□□□ -1.01
VPS50-212ENST00000476413 A0A1W2PQU0 124 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 LEFTY1O75610 366 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 RXRBP28702 533 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 TKFCQ3LXA3 575 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 FOXB2Q5VYV0 432 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 HEATR6Q6AI08 1181 aaKnown RBP8.74□□□□□ -1.01
VPS50-212ENST00000476413 HOMER1Q86YM7 354 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 C7orf61Q8IZ16 206 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 ZBTB38Q8NAP3 1195 aaPredicted RBP8.74□□□□□ -1.01
VPS50-212ENST00000476413 FGD4Q96M96 766 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 LGR4Q9BXB1 951 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 ASPNQ9BXN1 380 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 MKRN2Q9H000 416 aaKnown RBP8.74□□□□□ -1.01
VPS50-212ENST00000476413 ARHGEF4Q9NR80 690 aa8.74□□□□□ -1.01
VPS50-212ENST00000476413 CD247P20963 164 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 ETV3P41162 512 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 RNF4P78317 190 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 AUHQ13825 339 aaKnown RBP8.73□□□□□ -1.01
VPS50-212ENST00000476413 LONRF2Q1L5Z9 754 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 SV2CQ496J9 727 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 BEND4Q6ZU67 534 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 LRRC47Q8N1G4 583 aaKnown RBP8.73□□□□□ -1.01
VPS50-212ENST00000476413 DCAF5Q96JK2 942 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 STK17AQ9UEE5 414 aa8.73□□□□□ -1.01
VPS50-212ENST00000476413 C1QTNF9BB2RNN3 333 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 LRRN2O75325 713 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 ADMP35318 185 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 SNW1Q13573 536 aaKnown RBP8.72□□□□□ -1.01
VPS50-212ENST00000476413 NFKBIBQ15653 356 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 NBPF9Q3BBW0 867 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 C16orf86Q6ZW13 317 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 ZNF227Q86WZ6 799 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 SHISA5Q8N114 240 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 APBA2Q99767 749 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 FAM83CQ9BQN1 747 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 KCNF1Q9H3M0 494 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 GP6Q9HCN6 339 aa8.72□□□□□ -1.01
VPS50-212ENST00000476413 IQCA1LA6NCM1 817 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 DHX15O43143 795 aaKnown RBP8.71□□□□□ -1.02
VPS50-212ENST00000476413 ITGAVP06756 1048 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 NAT2P11245 290 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 PAOXQ6QHF9 649 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 CLEC10AQ8IUN9 316 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 ZSWIM2Q8NEG5 633 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 EXOC2Q96KP1 924 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 Q96M66 194 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 WHRNQ9P202 907 aa8.71□□□□□ -1.02
VPS50-212ENST00000476413 TBX1O43435 398 aa8.7□□□□□ -1.02
VPS50-212ENST00000476413 FAM87AP0C7U9 286 aa8.7□□□□□ -1.02
VPS50-212ENST00000476413 PPP2R2AP63151 447 aa8.7□□□□□ -1.02
VPS50-212ENST00000476413 TMEM67Q5HYA8 995 aa8.7□□□□□ -1.02
VPS50-212ENST00000476413 YOD1Q5VVQ6 348 aaPredicted RBP8.7□□□□□ -1.02
VPS50-212ENST00000476413 KISS1RQ969F8 398 aaPredicted RBP8.7□□□□□ -1.02
VPS50-212ENST00000476413 MRGPRX3Q96LB0 322 aa8.7□□□□□ -1.02
VPS50-212ENST00000476413 HEXIM2Q96MH2 286 aaKnown RBP8.7□□□□□ -1.02
VPS50-212ENST00000476413 HMX2A2RU54 273 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 GRIA2P42262 883 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 ZNF445P59923 1031 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 GPAT2Q6NUI2 795 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 LRRN4CLQ8ND94 238 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 GPATCH3Q96I76 525 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 FEZ1Q99689 392 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 PRDM14Q9GZV8 571 aa8.69□□□□□ -1.02
VPS50-212ENST00000476413 GBP3Q9H0R5 595 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms