RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 METTL13Q8N6R0 699 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 ERCC4Q92889 916 aaPredicted RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 FAM84BQ96KN1 310 aaPredicted RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 HAUS7Q99871 368 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 RBM28Q9NW13 759 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 TRPC6Q9Y210 931 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 SLIT1O75093 1534 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 KLRF2D3W0D1 207 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 NEMFO60524 1076 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 SLC16A2P36021 539 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 MRPS27Q92552 414 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 TM6SF1Q9BZW5 370 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 ZSWIM6Q9HCJ5 1215 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 ADGRB1O14514 1584 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 NTSR2O95665 410 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 CYP2E1P05181 493 aaPredicted RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 SSR1P43307 286 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 AMPD3Q01432 767 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 UBE3CQ15386 1083 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 GPATCH11Q8N954 259 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 DEFB129Q9H1M3 183 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 PUF60Q9UHX1 559 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 MRPL11Q9Y3B7 192 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 DLC1Q96QB1 1528 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 EPB41L2O43491 1005 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 FGAP02671 866 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 IGBP1P78318 339 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 CXCL9Q07325 125 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 CMTR1Q8N1G2 835 aaKnown RBP12□□□□□ -0.49
TCOF1-204ENST00000427724 LCORLQ8N3X6 602 aa12□□□□□ -0.49
TCOF1-204ENST00000427724 A0A1B0GVL5 298 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 LPXNO60711 386 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 NEBLO76041 1014 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 LRMPQ12912 555 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 SNW1Q13573 536 aaKnown RBP11.99□□□□□ -0.49
TCOF1-204ENST00000427724 PI4K2BQ8TCG2 481 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 SH3RF3Q8TEJ3 882 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-204ENST00000427724 SWAP70Q9UH65 585 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 DACH1Q9UI36 760 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 USP17L5A8MUK1 530 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 H0YHG0 523 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 TOP1P11387 765 aaKnown RBP11.99□□□□□ -0.49
TCOF1-204ENST00000427724 BMP3P12645 472 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 UBXN2AP68543 259 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 TSG101Q99816 390 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 DEF6Q9H4E7 631 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 MYOZ2Q9NPC6 264 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 PCDHA1Q9Y5I3 950 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 MRVI1Q9Y6F6 885 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 CDHR2Q9BYE9 1310 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 ARID4AP29374 1257 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-204ENST00000427724 GSDMDP57764 484 aa11.99□□□□□ -0.49
TCOF1-204ENST00000427724 KIF2AO00139 706 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-204ENST00000427724 LMAN1P49257 510 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 ADCY7P51828 1080 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 SEPT14Q6ZU15 432 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 CLSTN2Q9H4D0 955 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 RICTORQ6R327 1708 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 USP17L10C9JJH3 530 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 HMGCS2P54868 508 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 ZNF397Q8NF99 534 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-204ENST00000427724 SUGCTQ9HAC7 445 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 GPR108Q9NPR9 543 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 ADARB2Q9NS39 739 aaKnown RBP11.98□□□□□ -0.49
TCOF1-204ENST00000427724 TNKSO95271 1327 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 COL5A2P05997 1499 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-204ENST00000427724 NR1I2O75469 434 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 KRT2P35908 639 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 DPH6Q7L8W6 267 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 CPLX3Q8WVH0 158 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 PHKBQ93100 1093 aa11.98□□□□□ -0.49
TCOF1-204ENST00000427724 GBA2Q9HCG7 927 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-204ENST00000427724 PIH1D3Q9NQM4 214 aaKnown RBP11.98□□□□□ -0.49
TCOF1-204ENST00000427724 CCDC169A6NNP5 214 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 TTLL1O95922 423 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 C10orf67Q8IYJ2 551 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 PYCARDQ9ULZ3 195 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 CCL15-CCL14A0A0B4J2E2 113 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 HSPD1P10809 573 aaKnown RBP11.97□□□□□ -0.49
TCOF1-204ENST00000427724 DNM2P50570 870 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 ZNF75DP51815 510 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 CCL15Q16663 113 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 SMARCE1Q969G3 411 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 ADD3Q9UEY8 706 aaKnown RBP11.97□□□□□ -0.49
TCOF1-204ENST00000427724 ATP10DQ9P241 1426 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 MYOM1P52179 1685 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 MEGF6O75095 1541 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 GCOM1H8Y6P7 765 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-204ENST00000427724 FAM13AO94988 1023 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 POLR2MP0CAP2 368 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 DESP17661 470 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 TXKP42681 527 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 MCAMP43121 646 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 SYKP43405 635 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 AFMP43652 599 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 GABPB1Q06547 395 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-204ENST00000427724 DDR1Q08345 913 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 SEPT2Q15019 361 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 CCDC102AQ96A19 550 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 ZNF174Q15697 407 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms