RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 DHX40Q8IX18 779 aaKnown RBP20.84■□□□□ 0.93
USP48-204ENST00000400301 NAPGQ99747 312 aaPredicted RBP20.84■□□□□ 0.93
USP48-204ENST00000400301 SRPRBQ9Y5M8 271 aaKnown RBP20.84■□□□□ 0.93
USP48-204ENST00000400301 GSG1L2A8MUP6 293 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 ALX1Q15699 326 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 KRT25Q7Z3Z0 450 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 ZNF804BA4D1E1 1349 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 COBLO75128 1261 aa20.83■□□□□ 0.93
USP48-204ENST00000400301 FUCA2Q9BTY2 467 aa20.83■□□□□ 0.93
USP48-204ENST00000400301 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.83■□□□□ 0.93
USP48-204ENST00000400301 UBN2Q6ZU65 1347 aa20.83■□□□□ 0.93
USP48-204ENST00000400301 WDHD1O75717 1129 aaPredicted RBP20.83■□□□□ 0.93
USP48-204ENST00000400301 ERCC5P28715 1186 aaPredicted RBP20.83■□□□□ 0.93
USP48-204ENST00000400301 ZFYVE27Q5T4F4 411 aa20.83■□□□□ 0.93
USP48-204ENST00000400301 STX10O60499 249 aa20.83■□□□□ 0.92
USP48-204ENST00000400301 PTPREP23469 700 aa20.83■□□□□ 0.92
USP48-204ENST00000400301 SAMSN1Q9NSI8 373 aaKnown RBP20.83■□□□□ 0.92
USP48-204ENST00000400301 MON2Q7Z3U7 1717 aa20.83■□□□□ 0.92
USP48-204ENST00000400301 SLFN14P0C7P3 912 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 GOLGA8HP0CJ92 632 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 NOP2P46087 812 aaKnown RBP20.82■□□□□ 0.92
USP48-204ENST00000400301 EPSTI1Q96J88 318 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 GSDMAQ96QA5 445 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 SPAG5Q96R06 1193 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 NAA15Q9BXJ9 866 aaKnown RBP20.82■□□□□ 0.92
USP48-204ENST00000400301 SETQ01105 290 aaPredicted RBP20.82■□□□□ 0.92
USP48-204ENST00000400301 CABP7Q86V35 215 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 ARID5AQ03989 594 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 SGMS1Q86VZ5 419 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 VSTM4Q8IW00 320 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 ENOX1Q8TC92 643 aaKnown RBP20.82■□□□□ 0.92
USP48-204ENST00000400301 MORC3Q14149 939 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 CTR9Q6PD62 1173 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 EYA3Q99504 573 aa20.82■□□□□ 0.92
USP48-204ENST00000400301 GTPBP6O43824 516 aaPredicted RBP20.81■□□□□ 0.92
USP48-204ENST00000400301 ERMNQ8TAM6 284 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 RASGRP4Q8TDF6 673 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 LRWD1Q9UFC0 647 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 H0YHG0 523 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 PLEKHA8P1O95397 391 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 HMGB2P26583 209 aaKnown RBP20.81■□□□□ 0.92
USP48-204ENST00000400301 SHC4Q6S5L8 630 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 LZTS2Q9BRK4 669 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 RIMS1Q86UR5 1692 aaKnown RBP20.81■□□□□ 0.92
USP48-204ENST00000400301 MACROD2A1Z1Q3 448 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 KCNJ18B7U540 433 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 TUBB4BP68371 445 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 KCNJ12Q14500 433 aa20.81■□□□□ 0.92
USP48-204ENST00000400301 RBM17Q96I25 401 aaKnown RBP20.81■□□□□ 0.92
USP48-204ENST00000400301 STK36Q9NRP7 1315 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 SMCO2A6NFE2 343 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 USP27XA6NNY8 438 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 SEMA3EO15041 775 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 ERLIN2O94905 339 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 CASP7P55210 303 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 CNNM4Q6P4Q7 775 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 NEK11Q8NG66 645 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 KLRF2D3W0D1 207 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 PRPF3O43395 683 aaKnown RBP20.8■□□□□ 0.92
USP48-204ENST00000400301 IL17RAQ96F46 866 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 TBCAO75347 108 aaKnown RBP20.8■□□□□ 0.92
USP48-204ENST00000400301 CDC25AP30304 524 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 MRPL12P52815 198 aaKnown RBP20.8■□□□□ 0.92
USP48-204ENST00000400301 PPP1R2P41236 205 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 REXO1Q8N1G1 1221 aaKnown RBP20.8■□□□□ 0.92
USP48-204ENST00000400301 OXER1Q8TDS5 423 aa20.8■□□□□ 0.92
USP48-204ENST00000400301 DLG5Q8TDM6 1919 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 TMCO5BA8MYB1 307 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 PHACTR2O75167 634 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 DYMQ7RTS9 669 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 ERCC3P19447 782 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 TRMT1LQ7Z2T5 733 aaKnown RBP20.79■□□□□ 0.92
USP48-204ENST00000400301 EEF2KMTQ96G04 330 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 UBR1Q8IWV7 1749 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 TRAF5O00463 557 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 MFSD14BQ5SR56 506 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 CCDC51Q96ER9 411 aa20.79■□□□□ 0.92
USP48-204ENST00000400301 OSBPL5Q9H0X9 879 aaPredicted RBP20.79■□□□□ 0.92
USP48-204ENST00000400301 RPN1P04843 607 aaKnown RBP20.78■□□□□ 0.92
USP48-204ENST00000400301 ODF2Q5BJF6 829 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 CPDO75976 1380 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 FCHSD1Q86WN1 690 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 BPIFA3Q9BQP9 254 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 SENP2Q9HC62 589 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 AP5Z1O43299 807 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 GUCY1A2P33402 732 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 MECOMQ03112 1051 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 NAA30Q147X3 362 aaPredicted RBP20.78■□□□□ 0.92
USP48-204ENST00000400301 NKX1-1Q15270 411 aaPredicted RBP20.78■□□□□ 0.92
USP48-204ENST00000400301 CERS3Q8IU89 383 aa20.78■□□□□ 0.92
USP48-204ENST00000400301 BSDC1Q9NW68 430 aaPredicted RBP20.78■□□□□ 0.92
USP48-204ENST00000400301 TRAPPC10P48553 1259 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 GABPB1Q06547 395 aaPredicted RBP20.77■□□□□ 0.92
USP48-204ENST00000400301 NCBP1Q09161 790 aaKnown RBP20.77■□□□□ 0.92
USP48-204ENST00000400301 HLTFQ14527 1009 aaKnown RBP eCLIP20.77■□□□□ 0.923e-6■■■□□ 17.5
USP48-204ENST00000400301 GPIHBP1Q8IV16 184 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 IGDCC4Q8TDY8 1250 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 SNX29Q8TEQ0 813 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 TSPYL1Q9H0U9 437 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 BIN2Q9UBW5 565 aaPredicted RBP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms