RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 TYW1BQ6NUM6 668 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 N4BP2L2Q92802 583 aaPredicted RBP13.72□□□□□ -0.21
CHD3-203ENST00000380358 AKT3Q9Y243 479 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 S100BP04271 92 aaPredicted RBP13.72□□□□□ -0.21
CHD3-203ENST00000380358 NLRX1Q86UT6 975 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 IFNLR1Q8IU57 520 aaPredicted RBP13.72□□□□□ -0.21
CHD3-203ENST00000380358 HVCN1Q96D96 273 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.72□□□□□ -0.21
CHD3-203ENST00000380358 SERPINB6P35237 376 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 DLGAP5Q15398 846 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 ZBED2Q9BTP6 218 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 C9orf84Q5VXU9 1444 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 EEPD1Q7L9B9 569 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 LMNTD2Q8IXW0 634 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 ATP2A3Q93084 1043 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 SLC7A5P2Q9GIP4 190 aa13.72□□□□□ -0.21
CHD3-203ENST00000380358 CPSF2Q9P2I0 782 aaKnown RBP13.72□□□□□ -0.21
CHD3-203ENST00000380358 COBLO75128 1261 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 F13A1P00488 732 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 IQCB1Q15051 598 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 KRT24Q2M2I5 525 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 CCDC157Q569K6 752 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 DPP9Q86TI2 863 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 TPX2Q9ULW0 747 aaKnown RBP13.71□□□□□ -0.21
CHD3-203ENST00000380358 LMTK3Q96Q04 1460 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 NDUFAB1O14561 156 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 ITGA6P23229 1130 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 CREB3L3Q68CJ9 461 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 DPY19L2Q6NUT2 758 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 CCDC13Q8IYE1 715 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 KCTD17Q8N5Z5 321 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 PTPN22Q9Y2R2 807 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 KDRP35968 1356 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 GNAT2P19087 354 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 NUCB1Q02818 461 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 LONRF2Q1L5Z9 754 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 TMEM259Q4ZIN3 620 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 LIG4P49917 911 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 EVCP57679 992 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 CNNM4Q6P4Q7 775 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 AFAP1L1Q8TED9 768 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 U2AF1L4Q8WU68 220 aaKnown RBP13.71□□□□□ -0.21
CHD3-203ENST00000380358 EXT2Q93063 718 aa13.71□□□□□ -0.21
CHD3-203ENST00000380358 FAM207AQ9NSI2 230 aaPredicted RBP13.71□□□□□ -0.21
CHD3-203ENST00000380358 ANKRD20A3Q5VUR7 823 aa13.71□□□□□ -0.22
CHD3-203ENST00000380358 RSRC2Q7L4I2 434 aaKnown RBP13.71□□□□□ -0.22
CHD3-203ENST00000380358 KRT82Q9NSB4 513 aa13.71□□□□□ -0.22
CHD3-203ENST00000380358 CFTRP13569 1480 aa13.71□□□□□ -0.22
CHD3-203ENST00000380358 CADPS2Q86UW7 1296 aa13.71□□□□□ -0.22
CHD3-203ENST00000380358 KCNJ14Q9UNX9 436 aa13.71□□□□□ -0.22
CHD3-203ENST00000380358 OCM2P0CE71 109 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 OCMP0CE72 109 aaPredicted RBP13.7□□□□□ -0.22
CHD3-203ENST00000380358 TAOK1Q7L7X3 1001 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 DCPSQ96C86 337 aaKnown RBP13.7□□□□□ -0.22
CHD3-203ENST00000380358 LRRIQ4A6NIV6 560 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 PPFIA2O75334 1257 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 GTF2IP78347 998 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 HAUS3Q68CZ6 603 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 CCDC93Q567U6 631 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 TMOD1P28289 359 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 CNGA4Q8IV77 575 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 ESYT1Q9BSJ8 1104 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 BUB1O43683 1085 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 P4HA1P13674 534 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 TTC19Q6DKK2 380 aaPredicted RBP13.7□□□□□ -0.22
CHD3-203ENST00000380358 FAM71BQ8TC56 605 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 FAM8A1Q9UBU6 413 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 PRIM1P49642 420 aaKnown RBP13.7□□□□□ -0.22
CHD3-203ENST00000380358 PPP2R5EQ16537 467 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 CCDC127Q96BQ5 260 aa13.7□□□□□ -0.22
CHD3-203ENST00000380358 APOEP02649 317 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 OSTNP61366 133 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 DBN1Q16643 649 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 NAA35Q5VZE5 725 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 C1orf228Q6PIY5 440 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 MIER3Q7Z3K6 550 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 BAIAP2L1Q9UHR4 511 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 LGSNQ5TDP6 509 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 HDXQ7Z353 690 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 TRMT44Q8IYL2 757 aaKnown RBP13.69□□□□□ -0.22
CHD3-203ENST00000380358 LSM14BQ9BX40 385 aaKnown RBP13.69□□□□□ -0.22
CHD3-203ENST00000380358 RTEL1Q9NZ71 1219 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 PEX26Q7Z412 305 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 NCKAP5LQ9HCH0 1330 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 RCN2Q14257 317 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 XKR9Q5GH70 373 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 EEF2KMTQ96G04 330 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 SUCLA2Q9P2R7 463 aaPredicted RBP13.69□□□□□ -0.22
CHD3-203ENST00000380358 DENND2AQ9ULE3 1009 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 GAS7O60861 476 aa13.69□□□□□ -0.22
CHD3-203ENST00000380358 NKX1-1Q15270 411 aaPredicted RBP13.69□□□□□ -0.22
CHD3-203ENST00000380358 ADCY7P51828 1080 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 MUM1Q2TAK8 710 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 DENND2CQ68D51 928 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 RRAGAQ7L523 313 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 LRRC47Q8N1G4 583 aaKnown RBP13.68□□□□□ -0.22
CHD3-203ENST00000380358 USP40Q9NVE5 1235 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 SYNRGQ9UMZ2 1314 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 ADCY8P40145 1251 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 KLHL30Q0D2K2 578 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms